SMTL ID : 7ufv.2 (1 other biounit)

Crystal structure of the WDR domain of human DCAF1 in complex with OICR-6766

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x N6O: (3P)-N-[(1S)-3-amino-1-(3-chlorophenyl)-3-oxopropyl]-3-(2-fluorophenyl)-1H-pyrazole-4-carboxamide(Non-covalent)

N6O.1: 17 residues within 4Å: Chain A: T.64, H.65, Y.106, R.150, C.152, R.223, V.224, V.225, Y.234, A.236, L.238, P.254, F.255, I.279, F.280, D.281, L.282 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:R.223, A:R.223, A:V.225, A:A.236, A:L.238, A:F.255, A:L.282 Hydrogen bonds: A:R.223, A:F.280, A:D.281, A:D.281 pi-Stacking: A:F.255

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 5 residues within 4Å: Chain A: T.39, G.40, Q.41, N.57, H.59 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, A.S.M. et al., Discovery of Nanomolar DCAF1 Small Molecule Ligands. J.Med.Chem. (2023)

Release Date

2022-05-04

Peptides

DDB1- and CUL4-associated factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DDB1- and CUL4-associated factor 1

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