SMTL ID : 8f8e.2 (1 other biounit)

Crystal structure of the WDR domain of human DCAF1 in complex with OICR-8268 compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x XJI: (3P)-N-[(1S)-3-amino-1-(3-chloro-4-fluorophenyl)-3-oxopropyl]-3-(4-chloro-2-fluorophenyl)-1H-pyrazole-4-carboxamide(Non-covalent)

XJI.1: 18 residues within 4Å: Chain A: T.64, H.65, Y.106, R.150, C.152, R.223, V.224, V.225, Y.234, G.235, A.236, L.238, P.254, F.255, I.279, F.280, D.281, L.282 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.223, A:V.225, A:L.238, A:F.255 Hydrogen bonds: A:R.223, A:F.280, A:D.281, A:D.281 Water bridges: A:C.24 pi-Stacking: A:F.255 Halogen bonds: A:R.150

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 6 residues within 4Å: Chain A: R.277, E.295, Q.297, G.298, V.308, R.310 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.297 Hydrogen bonds: A:G.298 Water bridges: A:R.310 Salt bridges: A:R.277, A:R.277, A:R.310, A:R.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kimani, S. et al., Crystal structure of the WDR domain of human DCAF1 in complex with OICR-8268 compound. To be published

Release Date

2023-03-01

Peptides

DDB1- and CUL4-associated factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DDB1- and CUL4-associated factor 1

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