SMTL ID : 7ums.1

Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 in complex with antibody 41 - Upright conformation

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-2-2-18-18-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain 2: I.170, T.171, V.212, N.238, L.239, T.240, T.241 No protein-ligand interaction detected (PLIP)

35 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain 2: N.69 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain 3: Y.67, S.68, N.69 Ligand excluded by PLIP NAG.8: 7 residues within 4Å: Chain 3: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.15: 2 residues within 4Å: Chain 4: S.68, N.69 Ligand excluded by PLIP NAG.16: 7 residues within 4Å: Chain 4: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.19: 4 residues within 4Å: Chain 5: N.69 Chain B: E.316, S.320, K.370 Ligand excluded by PLIP NAG.20: 7 residues within 4Å: Chain 5: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.25: 2 residues within 4Å: Chain 6: S.68, N.69 Ligand excluded by PLIP NAG.26: 8 residues within 4Å: Chain 6: I.170, T.171, V.212, D.213, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.33: 1 residues within 4Å: Chain 7: N.69 Ligand excluded by PLIP NAG.34: 7 residues within 4Å: Chain 7: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.37: 3 residues within 4Å: Chain 8: Y.67, S.68, N.69 Ligand excluded by PLIP NAG.38: 7 residues within 4Å: Chain 8: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.43: 1 residues within 4Å: Chain 9: N.69 Ligand excluded by PLIP NAG.44: 7 residues within 4Å: Chain 9: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.51: 1 residues within 4Å: Chain a: N.69 Ligand excluded by PLIP NAG.52: 7 residues within 4Å: Chain a: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.55: 1 residues within 4Å: Chain b: N.69 Ligand excluded by PLIP NAG.56: 7 residues within 4Å: Chain b: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.61: 2 residues within 4Å: Chain c: N.69, S.70 Ligand excluded by PLIP NAG.62: 6 residues within 4Å: Chain c: T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.69: 2 residues within 4Å: Chain U: A.203 Chain d: N.69 Ligand excluded by PLIP NAG.70: 7 residues within 4Å: Chain d: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.73: 1 residues within 4Å: Chain e: N.69 Ligand excluded by PLIP NAG.74: 8 residues within 4Å: Chain e: I.170, T.171, K.194, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.79: 6 residues within 4Å: Chain F: Q.263, E.521 Chain f: T.65, V.66, Y.67, N.69 Ligand excluded by PLIP NAG.80: 7 residues within 4Å: Chain f: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.87: 1 residues within 4Å: Chain g: N.69 Ligand excluded by PLIP NAG.88: 7 residues within 4Å: Chain g: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.91: 1 residues within 4Å: Chain h: N.69 Ligand excluded by PLIP NAG.92: 7 residues within 4Å: Chain h: I.170, T.171, K.194, V.212, N.238, L.239, T.240 Ligand excluded by PLIP NAG.97: 1 residues within 4Å: Chain i: N.69 Ligand excluded by PLIP NAG.98: 7 residues within 4Å: Chain i: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.105: 2 residues within 4Å: Chain j: Y.67, N.69 Ligand excluded by PLIP NAG.106: 6 residues within 4Å: Chain j: I.170, T.171, V.212, N.238, L.239, T.240 Ligand excluded by PLIP

72 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain 2: D.151, E.154, E.222, L.224, A.225 5 PLIP interactions: 5 interactions with chain 2 Metal complexes: 2:D.151, 2:E.154, 2:E.154, 2:E.222, 2:L.224 CA.4: 6 residues within 4Å: Chain 2: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 2 Metal complexes: 2:D.270, 2:D.270, 2:T.272, 2:D.274, 2:T.277 CA.5: 8 residues within 4Å: Chain 2: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 Chain 3: D.301 4 PLIP interactions: 3 interactions with chain 2, 1 interactions with chain 3 Metal complexes: 2:D.228, 2:D.228, 2:D.231, 3:D.301 CA.6: 4 residues within 4Å: Chain 2: G.206, S.214, E.216 Chain 3: D.95 5 PLIP interactions: 4 interactions with chain 2, 1 interactions with chain 3 Metal complexes: 2:G.206, 2:S.214, 2:E.216, 2:E.216, 3:D.95 CA.9: 5 residues within 4Å: Chain 3: D.151, E.154, E.222, L.224, A.225 4 PLIP interactions: 4 interactions with chain 3 Metal complexes: 3:D.151, 3:E.154, 3:E.222, 3:L.224 CA.10: 6 residues within 4Å: Chain 3: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 3 Metal complexes: 3:D.270, 3:D.270, 3:T.272, 3:D.274, 3:T.277 CA.11: 7 residues within 4Å: Chain 3: Q.177, N.182, D.228, V.229, D.231 Chain 4: D.301, Y.302 5 PLIP interactions: 4 interactions with chain 3, 1 interactions with chain 4 Metal complexes: 3:D.228, 3:D.228, 3:V.229, 3:D.231, 4:D.301 CA.12: 5 residues within 4Å: Chain 3: G.206, C.207, S.214, E.216 Chain 4: D.95 5 PLIP interactions: 4 interactions with chain 3, 1 interactions with chain 4 Metal complexes: 3:G.206, 3:S.214, 3:E.216, 3:E.216, 4:D.95 CA.13: 9 residues within 4Å: Chain 2: D.301 Chain 4: Q.177, G.179, E.180, N.182, K.183, D.228, V.229, D.231 5 PLIP interactions: 4 interactions with chain 4, 1 interactions with chain 2 Metal complexes: 4:D.228, 4:D.228, 4:D.231, 4:D.231, 2:D.301 CA.14: 4 residues within 4Å: Chain 2: D.95 Chain 4: G.206, S.214, E.216 4 PLIP interactions: 3 interactions with chain 4, 1 interactions with chain 2 Metal complexes: 4:G.206, 4:S.214, 4:E.216, 2:D.95 CA.17: 5 residues within 4Å: Chain 4: D.151, E.154, E.222, L.224, A.225 4 PLIP interactions: 4 interactions with chain 4 Metal complexes: 4:D.151, 4:E.154, 4:E.222, 4:L.224 CA.18: 6 residues within 4Å: Chain 4: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 4 Metal complexes: 4:D.270, 4:D.270, 4:T.272, 4:D.274, 4:T.277 CA.21: 4 residues within 4Å: Chain 5: D.151, E.154, E.222, L.224 4 PLIP interactions: 4 interactions with chain 5 Metal complexes: 5:D.151, 5:E.154, 5:E.222, 5:L.224 CA.22: 6 residues within 4Å: Chain 5: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 5 Metal complexes: 5:D.270, 5:D.270, 5:T.272, 5:D.274, 5:T.277 CA.23: 9 residues within 4Å: Chain 5: Q.177, G.179, E.180, N.182, K.183, D.228, V.229, D.231 Chain 6: D.301 4 PLIP interactions: 3 interactions with chain 5, 1 interactions with chain 6 Metal complexes: 5:D.228, 5:D.228, 5:D.231, 6:D.301 CA.24: 5 residues within 4Å: Chain 5: G.206, C.207, S.214, E.216 Chain 6: D.95 5 PLIP interactions: 4 interactions with chain 5, 1 interactions with chain 6 Metal complexes: 5:G.206, 5:S.214, 5:E.216, 5:E.216, 6:D.95 CA.27: 7 residues within 4Å: Chain 6: L.150, D.151, E.154, E.222, L.224, A.225 Chain 7: K.290 5 PLIP interactions: 5 interactions with chain 6 Metal complexes: 6:D.151, 6:E.154, 6:E.154, 6:E.222, 6:L.224 CA.28: 6 residues within 4Å: Chain 6: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 6 Metal complexes: 6:D.270, 6:D.270, 6:T.272, 6:D.274, 6:T.277 CA.29: 7 residues within 4Å: Chain 6: Q.177, N.182, K.183, D.228, V.229, D.231 Chain 7: D.301 5 PLIP interactions: 1 interactions with chain 7, 4 interactions with chain 6 Metal complexes: 7:D.301, 6:D.228, 6:D.228, 6:D.231, 6:D.231 CA.30: 4 residues within 4Å: Chain 6: G.206, S.214, E.216 Chain 7: D.95 5 PLIP interactions: 4 interactions with chain 6, 1 interactions with chain 7 Metal complexes: 6:G.206, 6:S.214, 6:E.216, 6:E.216, 7:D.95 CA.31: 7 residues within 4Å: Chain 5: D.301 Chain 7: Q.177, N.182, K.183, D.228, V.229, D.231 5 PLIP interactions: 4 interactions with chain 7, 1 interactions with chain 5 Metal complexes: 7:D.228, 7:D.228, 7:D.231, 7:D.231, 5:D.301 CA.32: 4 residues within 4Å: Chain 5: D.95 Chain 7: G.206, S.214, E.216 5 PLIP interactions: 2 interactions with chain 5, 3 interactions with chain 7 Metal complexes: 5:D.95, 5:D.95, 7:G.206, 7:S.214, 7:E.216 CA.35: 4 residues within 4Å: Chain 7: D.151, E.154, E.222, L.224 4 PLIP interactions: 4 interactions with chain 7 Metal complexes: 7:D.151, 7:E.154, 7:E.222, 7:L.224 CA.36: 6 residues within 4Å: Chain 7: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 7 Metal complexes: 7:D.270, 7:D.270, 7:T.272, 7:D.274, 7:T.277 CA.39: 5 residues within 4Å: Chain 8: D.151, E.154, E.222, L.224, A.225 5 PLIP interactions: 5 interactions with chain 8 Metal complexes: 8:D.151, 8:E.154, 8:E.222, 8:E.222, 8:L.224 CA.40: 6 residues within 4Å: Chain 8: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 8 Metal complexes: 8:D.270, 8:D.270, 8:T.272, 8:D.274, 8:T.277 CA.41: 8 residues within 4Å: Chain 8: Q.177, E.180, N.182, K.183, D.228, V.229, D.231 Chain 9: D.301 4 PLIP interactions: 3 interactions with chain 8, 1 interactions with chain 9 Metal complexes: 8:D.228, 8:D.228, 8:D.231, 9:D.301 CA.42: 5 residues within 4Å: Chain 8: G.206, C.207, S.214, E.216 Chain 9: D.95 4 PLIP interactions: 3 interactions with chain 8, 1 interactions with chain 9 Metal complexes: 8:G.206, 8:S.214, 8:E.216, 9:D.95 CA.45: 4 residues within 4Å: Chain 9: D.151, E.154, E.222, L.224 4 PLIP interactions: 4 interactions with chain 9 Metal complexes: 9:D.151, 9:E.154, 9:E.222, 9:L.224 CA.46: 6 residues within 4Å: Chain 9: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 9 Metal complexes: 9:D.270, 9:D.270, 9:T.272, 9:D.274, 9:T.277 CA.47: 8 residues within 4Å: Chain 9: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 Chain a: D.301 4 PLIP interactions: 1 interactions with chain a, 3 interactions with chain 9 Metal complexes: a:D.301, 9:D.228, 9:D.228, 9:D.231 CA.48: 5 residues within 4Å: Chain 9: G.206, C.207, S.214, E.216 Chain a: D.95 4 PLIP interactions: 3 interactions with chain 9, 1 interactions with chain a Metal complexes: 9:G.206, 9:S.214, 9:E.216, a:D.95 CA.49: 8 residues within 4Å: Chain 8: D.301 Chain a: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 4 PLIP interactions: 3 interactions with chain a, 1 interactions with chain 8 Metal complexes: a:D.228, a:D.228, a:D.231, 8:D.301 CA.50: 5 residues within 4Å: Chain 8: D.95 Chain a: G.206, C.207, S.214, E.216 5 PLIP interactions: 1 interactions with chain 8, 4 interactions with chain a Metal complexes: 8:D.95, a:G.206, a:S.214, a:E.216, a:E.216 CA.53: 6 residues within 4Å: Chain a: D.151, E.154, E.222, L.224, A.225, I.226 5 PLIP interactions: 5 interactions with chain a Metal complexes: a:D.151, a:E.154, a:E.154, a:E.222, a:L.224 CA.54: 6 residues within 4Å: Chain a: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain a Metal complexes: a:D.270, a:D.270, a:T.272, a:D.274, a:T.277 CA.57: 5 residues within 4Å: Chain b: D.151, E.154, E.222, L.224, A.225 4 PLIP interactions: 4 interactions with chain b Metal complexes: b:D.151, b:E.154, b:E.222, b:L.224 CA.58: 6 residues within 4Å: Chain b: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain b Metal complexes: b:D.270, b:D.270, b:T.272, b:D.274, b:T.277 CA.59: 7 residues within 4Å: Chain b: Q.177, N.182, K.183, D.228, V.229, D.231 Chain c: D.301 4 PLIP interactions: 3 interactions with chain b, 1 interactions with chain c Metal complexes: b:D.228, b:D.228, b:D.231, c:D.301 CA.60: 5 residues within 4Å: Chain b: G.206, C.207, S.214, E.216 Chain c: D.95 5 PLIP interactions: 4 interactions with chain b, 1 interactions with chain c Metal complexes: b:G.206, b:S.214, b:E.216, b:E.216, c:D.95 CA.63: 6 residues within 4Å: Chain c: V.125, D.151, E.154, E.222, K.223, L.224 4 PLIP interactions: 4 interactions with chain c Metal complexes: c:D.151, c:E.154, c:E.222, c:L.224 CA.64: 6 residues within 4Å: Chain c: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain c Metal complexes: c:D.270, c:D.270, c:T.272, c:D.274, c:T.277 CA.65: 8 residues within 4Å: Chain c: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 Chain d: D.301 5 PLIP interactions: 1 interactions with chain d, 4 interactions with chain c Metal complexes: d:D.301, c:D.228, c:D.228, c:D.231, c:D.231 CA.66: 5 residues within 4Å: Chain c: G.206, S.214, E.216 Chain d: D.95, E.97 5 PLIP interactions: 4 interactions with chain c, 1 interactions with chain d Metal complexes: c:G.206, c:S.214, c:E.216, c:E.216, d:D.95 CA.67: 7 residues within 4Å: Chain b: D.301 Chain d: Q.177, G.179, N.182, D.228, V.229, D.231 5 PLIP interactions: 4 interactions with chain d, 1 interactions with chain b Metal complexes: d:D.228, d:D.228, d:V.229, d:D.231, b:D.301 CA.68: 5 residues within 4Å: Chain b: D.95 Chain d: G.206, C.207, S.214, E.216 5 PLIP interactions: 4 interactions with chain d, 1 interactions with chain b Metal complexes: d:G.206, d:S.214, d:E.216, d:E.216, b:D.95 CA.71: 4 residues within 4Å: Chain d: D.151, E.154, E.222, L.224 4 PLIP interactions: 4 interactions with chain d Metal complexes: d:D.151, d:E.154, d:E.222, d:L.224 CA.72: 6 residues within 4Å: Chain d: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain d Metal complexes: d:D.270, d:D.270, d:T.272, d:D.274, d:T.277 CA.75: 4 residues within 4Å: Chain e: D.151, E.154, E.222, L.224 4 PLIP interactions: 4 interactions with chain e Metal complexes: e:D.151, e:E.154, e:E.222, e:L.224 CA.76: 6 residues within 4Å: Chain e: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain e Metal complexes: e:D.270, e:D.270, e:T.272, e:D.274, e:T.277 CA.77: 9 residues within 4Å: Chain e: Q.177, G.179, E.180, N.182, K.183, D.228, V.229, D.231 Chain f: D.301 4 PLIP interactions: 3 interactions with chain e, 1 interactions with chain f Metal complexes: e:D.228, e:D.228, e:D.231, f:D.301 CA.78: 5 residues within 4Å: Chain e: G.206, C.207, S.214, E.216 Chain f: D.95 4 PLIP interactions: 3 interactions with chain e, 1 interactions with chain f Metal complexes: e:G.206, e:S.214, e:E.216, f:D.95 CA.81: 5 residues within 4Å: Chain f: D.151, E.154, E.222, L.224, A.225 5 PLIP interactions: 5 interactions with chain f Metal complexes: f:D.151, f:E.154, f:E.154, f:E.222, f:L.224 CA.82: 6 residues within 4Å: Chain f: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain f Metal complexes: f:D.270, f:D.270, f:T.272, f:D.274, f:T.277 CA.83: 8 residues within 4Å: Chain f: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 Chain g: D.301 5 PLIP interactions: 4 interactions with chain f, 1 interactions with chain g Metal complexes: f:D.228, f:D.228, f:D.231, f:D.231, g:D.301 CA.84: 5 residues within 4Å: Chain f: G.206, S.214, E.216 Chain g: D.95, E.97 5 PLIP interactions: 4 interactions with chain f, 1 interactions with chain g Metal complexes: f:G.206, f:S.214, f:E.216, f:E.216, g:D.95 CA.85: 8 residues within 4Å: Chain e: D.301 Chain g: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 5 PLIP interactions: 1 interactions with chain e, 4 interactions with chain g Metal complexes: e:D.301, g:D.228, g:D.228, g:D.231, g:D.231 CA.86: 5 residues within 4Å: Chain e: D.95 Chain g: G.206, C.207, S.214, E.216 4 PLIP interactions: 1 interactions with chain e, 3 interactions with chain g Metal complexes: e:D.95, g:G.206, g:S.214, g:E.216 CA.89: 4 residues within 4Å: Chain g: D.151, E.154, E.222, L.224 4 PLIP interactions: 4 interactions with chain g Metal complexes: g:D.151, g:E.154, g:E.222, g:L.224 CA.90: 6 residues within 4Å: Chain g: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain g Metal complexes: g:D.270, g:D.270, g:T.272, g:D.274, g:T.277 CA.93: 7 residues within 4Å: Chain h: L.150, D.151, E.154, E.222, L.224, A.225 Chain i: K.290 5 PLIP interactions: 5 interactions with chain h Metal complexes: h:D.151, h:E.154, h:E.154, h:E.222, h:L.224 CA.94: 6 residues within 4Å: Chain h: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain h Metal complexes: h:D.270, h:D.270, h:T.272, h:D.274, h:T.277 CA.95: 8 residues within 4Å: Chain h: Q.177, E.180, N.182, K.183, D.228, V.229, D.231 Chain i: D.301 4 PLIP interactions: 1 interactions with chain i, 3 interactions with chain h Metal complexes: i:D.301, h:D.228, h:D.228, h:D.231 CA.96: 5 residues within 4Å: Chain h: G.206, C.207, S.214, E.216 Chain i: D.95 4 PLIP interactions: 1 interactions with chain i, 3 interactions with chain h Metal complexes: i:D.95, h:G.206, h:S.214, h:E.216 CA.99: 5 residues within 4Å: Chain i: D.151, E.154, E.222, L.224 Chain j: K.290 5 PLIP interactions: 5 interactions with chain i Metal complexes: i:D.151, i:D.151, i:E.154, i:E.222, i:L.224 CA.100: 6 residues within 4Å: Chain i: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain i Metal complexes: i:D.270, i:D.270, i:T.272, i:D.274, i:T.277 CA.101: 8 residues within 4Å: Chain i: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 Chain j: D.301 5 PLIP interactions: 1 interactions with chain j, 4 interactions with chain i Metal complexes: j:D.301, i:D.228, i:D.228, i:D.231, i:D.231 CA.102: 5 residues within 4Å: Chain i: G.206, C.207, S.214, E.216 Chain j: D.95 4 PLIP interactions: 3 interactions with chain i, 1 interactions with chain j Metal complexes: i:G.206, i:S.214, i:E.216, j:D.95 CA.103: 9 residues within 4Å: Chain h: D.301 Chain j: Q.177, G.179, E.180, N.182, K.183, D.228, V.229, D.231 4 PLIP interactions: 1 interactions with chain h, 3 interactions with chain j Metal complexes: h:D.301, j:D.228, j:D.228, j:D.231 CA.104: 5 residues within 4Å: Chain h: D.95 Chain j: G.206, C.207, S.214, E.216 4 PLIP interactions: 1 interactions with chain h, 3 interactions with chain j Metal complexes: h:D.95, j:G.206, j:S.214, j:E.216 CA.107: 5 residues within 4Å: Chain j: D.151, E.154, E.222, L.224, A.225 4 PLIP interactions: 4 interactions with chain j Metal complexes: j:D.151, j:E.154, j:E.222, j:L.224 CA.108: 6 residues within 4Å: Chain j: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain j Metal complexes: j:D.270, j:D.270, j:T.272, j:D.274, j:T.277

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jenni, S. et al., Rotavirus VP4 Epitope of a Broadly Neutralizing Human Antibody Defined by Its Structure Bound with an Attenuated-Strain Virion. J.Virol. (2022)

Release Date

2022-07-27

Peptides

Outer capsid protein VP8*: ACE
Outer capsid protein VP5*: BDF
Fab 41 heavy chain: GI
Fab 41 light chain: HJ
Intermediate capsid protein VP6: KLMNOPQRSTUVWXYZ01
Outer capsid glycoprotein VP7: 23456789abcdefghij

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
T

C
U

E
V

B
1

D
2

F
3

G
4

I
6

H
5

J
7

K
A

L
B

M
C

N
D

O
E

P
F

Q
G

R
H

S
I

T
J

U
K

V
L

W
M

X
N

Y
O

Z
P

0
Q

1
R

2
a

3
b

4
c

5
d

6
e

7
f

8
g

9
h

a
i

b
j

c
k

d
l

e
m

f
n

g
o

h
p

i
q

j
r

Outer capsid protein VP8*

Outer capsid protein VP5*

Fab 41 heavy chain

Fab 41 light chain

Intermediate capsid protein VP6

Outer capsid glycoprotein VP7

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