SMTL ID : 7umt.1

Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 - Reversed conformation

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-18-18-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 8 residues within 4Å: Chain V: I.170, T.171, V.212, I.237, N.238, L.239, T.240, T.241 No protein-ligand interaction detected (PLIP)

35 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain V: N.69 Ligand excluded by PLIP NAG.7: 4 residues within 4Å: Chain D: D.242 Chain W: Y.67, S.68, N.69 Ligand excluded by PLIP NAG.8: 7 residues within 4Å: Chain W: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.15: 2 residues within 4Å: Chain X: S.68, N.69 Ligand excluded by PLIP NAG.16: 7 residues within 4Å: Chain X: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.19: 1 residues within 4Å: Chain Y: N.69 Ligand excluded by PLIP NAG.20: 7 residues within 4Å: Chain Y: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.25: 2 residues within 4Å: Chain Z: S.68, N.69 Ligand excluded by PLIP NAG.26: 8 residues within 4Å: Chain Z: I.170, T.171, V.212, D.213, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.33: 1 residues within 4Å: Chain 0: N.69 Ligand excluded by PLIP NAG.34: 7 residues within 4Å: Chain 0: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.37: 3 residues within 4Å: Chain 1: Y.67, S.68, N.69 Ligand excluded by PLIP NAG.38: 7 residues within 4Å: Chain 1: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.43: 1 residues within 4Å: Chain 2: N.69 Ligand excluded by PLIP NAG.44: 7 residues within 4Å: Chain 2: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.51: 1 residues within 4Å: Chain 3: N.69 Ligand excluded by PLIP NAG.52: 7 residues within 4Å: Chain 3: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.55: 1 residues within 4Å: Chain 4: N.69 Ligand excluded by PLIP NAG.56: 7 residues within 4Å: Chain 4: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.61: 1 residues within 4Å: Chain 5: N.69 Ligand excluded by PLIP NAG.62: 7 residues within 4Å: Chain 5: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.69: 1 residues within 4Å: Chain 6: N.69 Ligand excluded by PLIP NAG.70: 7 residues within 4Å: Chain 6: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.73: 1 residues within 4Å: Chain 7: N.69 Ligand excluded by PLIP NAG.74: 7 residues within 4Å: Chain 7: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.79: 4 residues within 4Å: Chain 8: T.65, V.66, Y.67, N.69 Ligand excluded by PLIP NAG.80: 7 residues within 4Å: Chain 8: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.87: 1 residues within 4Å: Chain 9: N.69 Ligand excluded by PLIP NAG.88: 7 residues within 4Å: Chain 9: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.91: 1 residues within 4Å: Chain a: N.69 Ligand excluded by PLIP NAG.92: 7 residues within 4Å: Chain a: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.97: 1 residues within 4Å: Chain b: N.69 Ligand excluded by PLIP NAG.98: 7 residues within 4Å: Chain b: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP NAG.105: 2 residues within 4Å: Chain c: Y.67, N.69 Ligand excluded by PLIP NAG.106: 7 residues within 4Å: Chain c: I.170, T.171, V.212, N.238, L.239, T.240, T.241 Ligand excluded by PLIP

72 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain V: D.151, E.154, E.222, L.224, A.225 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:D.151, V:E.154, V:E.154, V:E.222, V:L.224 CA.4: 6 residues within 4Å: Chain V: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:D.270, V:D.270, V:T.272, V:D.274, V:T.277 CA.5: 8 residues within 4Å: Chain V: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 Chain W: D.301 4 PLIP interactions: 1 interactions with chain W, 3 interactions with chain V Metal complexes: W:D.301, V:D.228, V:D.228, V:D.231 CA.6: 5 residues within 4Å: Chain V: G.206, C.207, S.214, E.216 Chain W: D.95 5 PLIP interactions: 2 interactions with chain W, 3 interactions with chain V Metal complexes: W:D.95, W:D.95, V:G.206, V:S.214, V:E.216 CA.9: 5 residues within 4Å: Chain W: D.151, E.154, E.222, L.224, A.225 4 PLIP interactions: 4 interactions with chain W Metal complexes: W:D.151, W:E.154, W:E.222, W:L.224 CA.10: 6 residues within 4Å: Chain W: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain W Metal complexes: W:D.270, W:D.270, W:T.272, W:D.274, W:T.277 CA.11: 7 residues within 4Å: Chain W: Q.177, N.182, D.228, V.229, D.231 Chain X: D.301, Y.302 4 PLIP interactions: 1 interactions with chain X, 3 interactions with chain W Metal complexes: X:D.301, W:D.228, W:D.228, W:D.231 CA.12: 5 residues within 4Å: Chain W: G.206, C.207, S.214, E.216 Chain X: D.95 4 PLIP interactions: 3 interactions with chain W, 1 interactions with chain X Metal complexes: W:G.206, W:S.214, W:E.216, X:D.95 CA.13: 8 residues within 4Å: Chain V: D.301 Chain X: Q.177, E.180, N.182, K.183, D.228, V.229, D.231 5 PLIP interactions: 4 interactions with chain X, 1 interactions with chain V Metal complexes: X:D.228, X:D.228, X:D.231, X:D.231, V:D.301 CA.14: 5 residues within 4Å: Chain V: D.95 Chain X: G.206, C.207, S.214, E.216 5 PLIP interactions: 4 interactions with chain X, 1 interactions with chain V Metal complexes: X:G.206, X:S.214, X:E.216, X:E.216, V:D.95 CA.17: 5 residues within 4Å: Chain X: D.151, E.154, E.222, L.224, A.225 4 PLIP interactions: 4 interactions with chain X Metal complexes: X:D.151, X:E.154, X:E.222, X:L.224 CA.18: 6 residues within 4Å: Chain X: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain X Metal complexes: X:D.270, X:D.270, X:T.272, X:D.274, X:T.277 CA.21: 4 residues within 4Å: Chain Y: D.151, E.154, E.222, L.224 4 PLIP interactions: 4 interactions with chain Y Metal complexes: Y:D.151, Y:E.154, Y:E.222, Y:L.224 CA.22: 6 residues within 4Å: Chain Y: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain Y Metal complexes: Y:D.270, Y:D.270, Y:T.272, Y:D.274, Y:T.277 CA.23: 7 residues within 4Å: Chain Y: Q.177, N.182, K.183, D.228, V.229, D.231 Chain Z: D.301 4 PLIP interactions: 3 interactions with chain Y, 1 interactions with chain Z Metal complexes: Y:D.228, Y:D.228, Y:D.231, Z:D.301 CA.24: 5 residues within 4Å: Chain Y: G.206, C.207, S.214, E.216 Chain Z: D.95 5 PLIP interactions: 4 interactions with chain Y, 1 interactions with chain Z Metal complexes: Y:G.206, Y:S.214, Y:E.216, Y:E.216, Z:D.95 CA.27: 7 residues within 4Å: Chain 0: K.290 Chain Z: L.150, D.151, E.154, E.222, L.224, A.225 4 PLIP interactions: 4 interactions with chain Z Metal complexes: Z:D.151, Z:E.154, Z:E.222, Z:L.224 CA.28: 6 residues within 4Å: Chain Z: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain Z Metal complexes: Z:D.270, Z:D.270, Z:T.272, Z:D.274, Z:T.277 CA.29: 8 residues within 4Å: Chain 0: D.301 Chain Z: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 5 PLIP interactions: 4 interactions with chain Z, 1 interactions with chain 0 Metal complexes: Z:D.228, Z:D.228, Z:D.231, Z:D.231, 0:D.301 CA.30: 5 residues within 4Å: Chain 0: D.95 Chain Z: G.206, C.207, S.214, E.216 5 PLIP interactions: 4 interactions with chain Z, 1 interactions with chain 0 Metal complexes: Z:G.206, Z:S.214, Z:E.216, Z:E.216, 0:D.95 CA.31: 7 residues within 4Å: Chain 0: Q.177, N.182, K.183, D.228, V.229, D.231 Chain Y: D.301 4 PLIP interactions: 3 interactions with chain 0, 1 interactions with chain Y Metal complexes: 0:D.228, 0:D.228, 0:D.231, Y:D.301 CA.32: 4 residues within 4Å: Chain 0: G.206, S.214, E.216 Chain Y: D.95 5 PLIP interactions: 2 interactions with chain Y, 3 interactions with chain 0 Metal complexes: Y:D.95, Y:D.95, 0:G.206, 0:S.214, 0:E.216 CA.35: 4 residues within 4Å: Chain 0: D.151, E.154, E.222, L.224 4 PLIP interactions: 4 interactions with chain 0 Metal complexes: 0:D.151, 0:E.154, 0:E.222, 0:L.224 CA.36: 6 residues within 4Å: Chain 0: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 0 Metal complexes: 0:D.270, 0:D.270, 0:T.272, 0:D.274, 0:T.277 CA.39: 5 residues within 4Å: Chain 1: D.151, E.154, E.222, L.224, A.225 4 PLIP interactions: 4 interactions with chain 1 Metal complexes: 1:D.151, 1:E.154, 1:E.222, 1:L.224 CA.40: 6 residues within 4Å: Chain 1: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 1 Metal complexes: 1:D.270, 1:D.270, 1:T.272, 1:D.274, 1:T.277 CA.41: 8 residues within 4Å: Chain 1: Q.177, E.180, N.182, K.183, D.228, V.229, D.231 Chain 2: D.301 4 PLIP interactions: 1 interactions with chain 2, 3 interactions with chain 1 Metal complexes: 2:D.301, 1:D.228, 1:D.228, 1:D.231 CA.42: 5 residues within 4Å: Chain 1: G.206, C.207, S.214, E.216 Chain 2: D.95 5 PLIP interactions: 1 interactions with chain 2, 4 interactions with chain 1 Metal complexes: 2:D.95, 1:G.206, 1:S.214, 1:E.216, 1:E.216 CA.45: 6 residues within 4Å: Chain 2: L.150, D.151, E.154, E.222, L.224, A.225 4 PLIP interactions: 4 interactions with chain 2 Metal complexes: 2:D.151, 2:E.154, 2:E.222, 2:L.224 CA.46: 6 residues within 4Å: Chain 2: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 2 Metal complexes: 2:D.270, 2:D.270, 2:T.272, 2:D.274, 2:T.277 CA.47: 8 residues within 4Å: Chain 2: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 Chain 3: D.301 5 PLIP interactions: 4 interactions with chain 2, 1 interactions with chain 3 Metal complexes: 2:D.228, 2:D.228, 2:D.231, 2:D.231, 3:D.301 CA.48: 5 residues within 4Å: Chain 2: G.206, C.207, S.214, E.216 Chain 3: D.95 5 PLIP interactions: 4 interactions with chain 2, 1 interactions with chain 3 Metal complexes: 2:G.206, 2:S.214, 2:E.216, 2:E.216, 3:D.95 CA.49: 7 residues within 4Å: Chain 1: D.301 Chain 3: Q.177, N.182, K.183, D.228, V.229, D.231 4 PLIP interactions: 3 interactions with chain 3, 1 interactions with chain 1 Metal complexes: 3:D.228, 3:D.228, 3:D.231, 1:D.301 CA.50: 5 residues within 4Å: Chain 1: D.95 Chain 3: G.206, C.207, S.214, E.216 5 PLIP interactions: 1 interactions with chain 1, 4 interactions with chain 3 Metal complexes: 1:D.95, 3:G.206, 3:S.214, 3:E.216, 3:E.216 CA.53: 6 residues within 4Å: Chain 3: D.151, E.154, E.222, L.224, A.225, I.226 5 PLIP interactions: 5 interactions with chain 3 Metal complexes: 3:D.151, 3:E.154, 3:E.154, 3:E.222, 3:L.224 CA.54: 6 residues within 4Å: Chain 3: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 3 Metal complexes: 3:D.270, 3:D.270, 3:T.272, 3:D.274, 3:T.277 CA.57: 5 residues within 4Å: Chain 4: D.151, E.154, E.222, L.224, A.225 4 PLIP interactions: 4 interactions with chain 4 Metal complexes: 4:D.151, 4:E.154, 4:E.222, 4:L.224 CA.58: 6 residues within 4Å: Chain 4: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 4 Metal complexes: 4:D.270, 4:D.270, 4:T.272, 4:D.274, 4:T.277 CA.59: 8 residues within 4Å: Chain 4: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 Chain 5: D.301 4 PLIP interactions: 3 interactions with chain 4, 1 interactions with chain 5 Metal complexes: 4:D.228, 4:D.228, 4:D.231, 5:D.301 CA.60: 5 residues within 4Å: Chain 4: G.206, C.207, S.214, E.216 Chain 5: D.95 5 PLIP interactions: 1 interactions with chain 5, 4 interactions with chain 4 Metal complexes: 5:D.95, 4:G.206, 4:S.214, 4:E.216, 4:E.216 CA.63: 7 residues within 4Å: Chain 5: V.125, D.151, E.154, E.222, K.223, L.224 Chain 6: K.290 4 PLIP interactions: 4 interactions with chain 5 Metal complexes: 5:D.151, 5:E.154, 5:E.222, 5:L.224 CA.64: 6 residues within 4Å: Chain 5: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 5 Metal complexes: 5:D.270, 5:D.270, 5:T.272, 5:D.274, 5:T.277 CA.65: 7 residues within 4Å: Chain 5: Q.177, N.182, K.183, D.228, V.229, D.231 Chain 6: D.301 4 PLIP interactions: 3 interactions with chain 5, 1 interactions with chain 6 Metal complexes: 5:D.228, 5:D.228, 5:D.231, 6:D.301 CA.66: 4 residues within 4Å: Chain 5: G.206, S.214, E.216 Chain 6: D.95 5 PLIP interactions: 1 interactions with chain 6, 4 interactions with chain 5 Metal complexes: 6:D.95, 5:G.206, 5:S.214, 5:E.216, 5:E.216 CA.67: 8 residues within 4Å: Chain 4: D.301 Chain 6: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 5 PLIP interactions: 4 interactions with chain 6, 1 interactions with chain 4 Metal complexes: 6:D.228, 6:D.228, 6:D.231, 6:D.231, 4:D.301 CA.68: 4 residues within 4Å: Chain 4: D.95 Chain 6: G.206, S.214, E.216 5 PLIP interactions: 1 interactions with chain 4, 4 interactions with chain 6 Metal complexes: 4:D.95, 6:G.206, 6:S.214, 6:E.216, 6:E.216 CA.71: 4 residues within 4Å: Chain 6: D.151, E.154, E.222, L.224 4 PLIP interactions: 4 interactions with chain 6 Metal complexes: 6:D.151, 6:E.154, 6:E.222, 6:L.224 CA.72: 6 residues within 4Å: Chain 6: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 6 Metal complexes: 6:D.270, 6:D.270, 6:T.272, 6:D.274, 6:T.277 CA.75: 4 residues within 4Å: Chain 7: D.151, E.154, E.222, L.224 4 PLIP interactions: 4 interactions with chain 7 Metal complexes: 7:D.151, 7:E.154, 7:E.222, 7:L.224 CA.76: 6 residues within 4Å: Chain 7: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 7 Metal complexes: 7:D.270, 7:D.270, 7:T.272, 7:D.274, 7:T.277 CA.77: 8 residues within 4Å: Chain 7: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 Chain 8: D.301 5 PLIP interactions: 1 interactions with chain 8, 4 interactions with chain 7 Metal complexes: 8:D.301, 7:D.228, 7:D.228, 7:D.231, 7:D.231 CA.78: 5 residues within 4Å: Chain 7: G.206, C.207, S.214, E.216 Chain 8: D.95 4 PLIP interactions: 1 interactions with chain 8, 3 interactions with chain 7 Metal complexes: 8:D.95, 7:G.206, 7:S.214, 7:E.216 CA.81: 6 residues within 4Å: Chain 8: L.150, D.151, E.154, E.222, L.224, A.225 5 PLIP interactions: 5 interactions with chain 8 Metal complexes: 8:D.151, 8:E.154, 8:E.154, 8:E.222, 8:L.224 CA.82: 6 residues within 4Å: Chain 8: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 8 Metal complexes: 8:D.270, 8:D.270, 8:T.272, 8:D.274, 8:T.277 CA.83: 8 residues within 4Å: Chain 8: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 Chain 9: D.301 5 PLIP interactions: 4 interactions with chain 8, 1 interactions with chain 9 Metal complexes: 8:D.228, 8:D.228, 8:D.231, 8:D.231, 9:D.301 CA.84: 4 residues within 4Å: Chain 8: G.206, S.214, E.216 Chain 9: D.95 5 PLIP interactions: 4 interactions with chain 8, 1 interactions with chain 9 Metal complexes: 8:G.206, 8:S.214, 8:E.216, 8:E.216, 9:D.95 CA.85: 7 residues within 4Å: Chain 7: D.301 Chain 9: Q.177, N.182, K.183, D.228, V.229, D.231 4 PLIP interactions: 1 interactions with chain 7, 3 interactions with chain 9 Metal complexes: 7:D.301, 9:D.228, 9:D.228, 9:D.231 CA.86: 5 residues within 4Å: Chain 7: D.95 Chain 9: G.206, C.207, S.214, E.216 4 PLIP interactions: 3 interactions with chain 9, 1 interactions with chain 7 Metal complexes: 9:G.206, 9:S.214, 9:E.216, 7:D.95 CA.89: 4 residues within 4Å: Chain 9: D.151, E.154, E.222, L.224 4 PLIP interactions: 4 interactions with chain 9 Metal complexes: 9:D.151, 9:E.154, 9:E.222, 9:L.224 CA.90: 6 residues within 4Å: Chain 9: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain 9 Metal complexes: 9:D.270, 9:D.270, 9:T.272, 9:D.274, 9:T.277 CA.93: 7 residues within 4Å: Chain a: L.150, D.151, E.154, E.222, L.224, A.225 Chain b: K.290 5 PLIP interactions: 5 interactions with chain a Metal complexes: a:D.151, a:E.154, a:E.154, a:E.222, a:L.224 CA.94: 6 residues within 4Å: Chain a: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain a Metal complexes: a:D.270, a:D.270, a:T.272, a:D.274, a:T.277 CA.95: 8 residues within 4Å: Chain a: Q.177, E.180, N.182, K.183, D.228, V.229, D.231 Chain b: D.301 4 PLIP interactions: 1 interactions with chain b, 3 interactions with chain a Metal complexes: b:D.301, a:D.228, a:D.228, a:D.231 CA.96: 5 residues within 4Å: Chain a: G.206, C.207, S.214, E.216 Chain b: D.95 4 PLIP interactions: 3 interactions with chain a, 1 interactions with chain b Metal complexes: a:G.206, a:S.214, a:E.216, b:D.95 CA.99: 5 residues within 4Å: Chain b: D.151, E.154, E.222, L.224 Chain c: K.290 5 PLIP interactions: 5 interactions with chain b Metal complexes: b:D.151, b:D.151, b:E.154, b:E.222, b:L.224 CA.100: 6 residues within 4Å: Chain b: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain b Metal complexes: b:D.270, b:D.270, b:T.272, b:D.274, b:T.277 CA.101: 8 residues within 4Å: Chain b: Q.177, G.179, N.182, K.183, D.228, V.229, D.231 Chain c: D.301 5 PLIP interactions: 1 interactions with chain c, 4 interactions with chain b Metal complexes: c:D.301, b:D.228, b:D.228, b:D.231, b:D.231 CA.102: 5 residues within 4Å: Chain b: G.206, C.207, S.214, E.216 Chain c: D.95 5 PLIP interactions: 4 interactions with chain b, 1 interactions with chain c Metal complexes: b:G.206, b:S.214, b:E.216, b:E.216, c:D.95 CA.103: 9 residues within 4Å: Chain a: D.301 Chain c: Q.177, G.179, E.180, N.182, K.183, D.228, V.229, D.231 5 PLIP interactions: 4 interactions with chain c, 1 interactions with chain a Metal complexes: c:D.228, c:D.228, c:D.231, c:D.231, a:D.301 CA.104: 5 residues within 4Å: Chain a: D.95 Chain c: G.206, C.207, S.214, E.216 4 PLIP interactions: 3 interactions with chain c, 1 interactions with chain a Metal complexes: c:G.206, c:S.214, c:E.216, a:D.95 CA.107: 5 residues within 4Å: Chain c: D.151, E.154, E.222, L.224, A.225 4 PLIP interactions: 4 interactions with chain c Metal complexes: c:D.151, c:E.154, c:E.222, c:L.224 CA.108: 6 residues within 4Å: Chain c: D.270, T.272, D.274, P.275, T.277, N.278 5 PLIP interactions: 5 interactions with chain c Metal complexes: c:D.270, c:D.270, c:T.272, c:D.274, c:T.277

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jenni, S. et al., Rotavirus VP4 Epitope of a Broadly Neutralizing Human Antibody Defined by Its Structure Bound with an Attenuated-Strain Virion. J.Virol. (2022)

Release Date

2022-07-27

Peptides

Outer capsid protein VP5*: ABC
Intermediate capsid protein VP6: DEFGHIJKLMNOPQRSTU
Outer capsid glycoprotein VP7: VWXYZ0123456789abc

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
A

E
B

F
C

G
D

H
E

I
F

J
G

K
H

L
I

M
J

N
K

O
L

P
M

Q
N

R
O

S
P

T
Q

U
R

V
a

W
b

X
c

Y
d

Z
e

0
f

1
g

2
h

3
i

4
j

5
k

6
l

7
m

8
n

9
o

a
p

b
q

c
r

Outer capsid protein VP5*

Intermediate capsid protein VP6

Outer capsid glycoprotein VP7

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