SMTL ID : 7ur4.1

Cryo-EM Structure of the Neutralizing Antibody MPV467 in Complex with Prefusion Human Metapneumovirus F Glycoprotein

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 8 residues within 4Å: Chain A: F.168, K.171, N.172, R.175, K.188, S.192, F.196 Chain B: P.64 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 8 residues within 4Å: Chain B: F.168, K.171, N.172, R.175, K.188, F.196 Chain C: G.63, P.64 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 8 residues within 4Å: Chain A: P.64 Chain C: F.168, K.171, N.172, R.175, K.188, S.192, F.196 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 5 residues within 4Å: Chain A: E.349, I.352, N.353, T.356, T.357 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.356 Hydrogen bonds: A:N.353 NAG.5: 2 residues within 4Å: Chain A: D.54, N.57 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.57 NAG.6: 5 residues within 4Å: Chain B: E.349, I.352, N.353, T.356, T.357 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:T.356 Hydrogen bonds: B:E.349 NAG.7: 2 residues within 4Å: Chain B: D.54, N.57 No protein-ligand interaction detected (PLIP) NAG.8: 7 residues within 4Å: Chain C: Q.346, E.349, I.352, N.353, T.356, T.357, N.358 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:I.352 Hydrogen bonds: C:Q.346, C:E.349, C:E.349, C:T.357, C:N.358 NAG.9: 2 residues within 4Å: Chain C: E.56, N.57 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banerjee, A. et al., Structural basis for ultrapotent antibody-mediated neutralization of human metapneumovirus. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-06-08

Peptides

Fusion glycoprotein F0: ABC
MPV467 Fab Heavy chain: DFG
MPV467 Fab Light chain: EHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
F

F
H

G
I

E
G

H
J

I
L

Fusion glycoprotein F0

MPV467 Fab Heavy chain

MPV467 Fab Light chain