SMTL ID : 7ut1.1

Higher-order assembly of multiple MMTV strand transfer complex intasomes

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-16-mer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.9, A:H.13, A:C.37, A:C.40 ZN.2: 4 residues within 4Å: Chain B: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.9, B:H.13, B:C.37, B:C.40 ZN.3: 4 residues within 4Å: Chain E: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.9, E:H.13, E:C.37, E:C.40 ZN.4: 4 residues within 4Å: Chain F: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.9, F:H.13, F:C.37, F:C.40 ZN.5: 4 residues within 4Å: Chain G: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.9, G:H.13, G:C.37, G:C.40 ZN.6: 4 residues within 4Å: Chain H: H.9, H.13, C.37, C.40 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:H.9, H:H.9, H:H.13, H:C.37, H:C.40 ZN.7: 4 residues within 4Å: Chain O: H.9, H.13, C.37, C.40 5 PLIP interactions: 5 interactions with chain O Metal complexes: O:H.9, O:H.13, O:H.13, O:C.37, O:C.40 ZN.8: 4 residues within 4Å: Chain P: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain P Metal complexes: P:H.9, P:H.13, P:C.37, P:C.40 ZN.9: 4 residues within 4Å: Chain S: H.9, H.13, C.37, C.40 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:H.9, S:H.13, S:H.13, S:C.37, S:C.40 ZN.10: 4 residues within 4Å: Chain T: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain T Metal complexes: T:H.9, T:H.13, T:C.37, T:C.40 ZN.11: 4 residues within 4Å: Chain U: H.9, H.13, C.37, C.40 5 PLIP interactions: 5 interactions with chain U Metal complexes: U:H.9, U:H.13, U:H.13, U:C.37, U:C.40 ZN.12: 5 residues within 4Å: Chain V: H.9, H.13, C.37, C.40, K.170 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:H.9, V:H.13, V:H.13, V:C.37, V:C.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jozwik, I.K. et al., B-to-A transition in target DNA during retroviral integration. Nucleic Acids Res. (2022)

Release Date

2022-08-24

Peptides

Integrase: ABCDEFGHOPQRSTUV

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
a

B
b

C
c

D
d

E
e

F
f

G
g

H
h

O
A

P
B

Q
C

R
D

S
E

T
F

U
G

V
H

Integrase

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