SMTL ID : 7uz3.1

Band 3-Glycophorin A complex, outward facing

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-4)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC.1: 11 residues within 4Å: Chain C: R.432, N.433, Q.434, F.476, E.480, S.641, N.642, S.644, A.645, L.655, R.656 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:E.480, C:R.432, C:R.432, C:Q.434 Hydrophobic interactions: C:A.645 Water bridges: C:Q.434, C:E.480 NAG-NAG-BMA-MAN-MAN-FUC.2: 11 residues within 4Å: Chain D: R.432, N.433, Q.434, F.476, E.480, S.641, N.642, S.644, A.645, L.655, R.656 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:E.480, D:E.480, D:R.432, D:R.432, D:Q.434 Hydrophobic interactions: D:A.645 Water bridges: D:Q.434, D:E.480

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 14 residues within 4Å: Chain A: F.87, I.92, I.95, I.96, V.99, M.100 Chain C: W.492, F.495, W.496, L.499, L.653, I.661, M.664, F.665 11 PLIP interactions: 7 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:W.492, C:W.492, C:W.496, C:W.496, C:L.499, C:I.661, C:M.664, A:F.87, A:I.92, A:I.95, A:I.96 CLR.4: 7 residues within 4Å: Chain C: L.812, F.813, P.816, T.830, W.831, H.834 Ligands: PIO.7 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:P.816, C:T.830 CLR.8: 14 residues within 4Å: Chain B: F.87, I.92, I.95, I.96, V.99, M.100 Chain D: W.492, F.495, W.496, L.499, L.653, I.661, M.664, F.665 9 PLIP interactions: 5 interactions with chain D, 4 interactions with chain B Hydrophobic interactions: D:W.492, D:W.492, D:L.499, D:I.661, D:M.664, B:F.87, B:I.92, B:I.95, B:I.96 CLR.9: 7 residues within 4Å: Chain D: L.812, F.813, P.816, T.830, W.831, H.834 Ligands: PIO.6 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:P.816, D:T.830

2 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)

PLC.5: 19 residues within 4Å: Chain C: F.537, L.540, I.541, F.544, Q.545, P.548, L.549, L.572, L.575, M.578, A.579, F.582, L.793 Chain D: V.576, G.580, F.584, M.617, V.620, I.624 8 PLIP interactions: 2 interactions with chain D, 6 interactions with chain C Hydrophobic interactions: D:V.576, D:I.624, C:I.541, C:F.544, C:L.549, C:L.575, C:A.579 Hydrogen bonds: C:L.549 PLC.10: 19 residues within 4Å: Chain C: V.576, G.580, F.584, M.617, V.620, I.624 Chain D: F.537, L.540, I.541, F.544, Q.545, P.548, L.549, L.572, L.575, M.578, A.579, F.582, L.793 8 PLIP interactions: 6 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: D:I.541, D:F.544, D:L.549, D:L.575, D:A.579, C:V.576, C:I.624 Hydrogen bonds: D:L.549

2 x PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate(Non-covalent)

PIO.6: 14 residues within 4Å: Chain C: F.597, P.598, G.599, L.601, R.602, R.603 Chain D: L.812, F.813, K.814, P.815, P.816, K.817, Y.818 Ligands: CLR.9 12 PLIP interactions: 7 interactions with chain C, 5 interactions with chain D Hydrophobic interactions: C:F.597, C:P.598, C:L.601, D:F.813, D:P.815, D:P.815 Hydrogen bonds: C:G.599, C:R.602 Salt bridges: C:R.602, C:R.603, D:K.817, D:K.817 PIO.7: 14 residues within 4Å: Chain C: L.812, F.813, K.814, P.815, P.816, K.817, Y.818 Chain D: F.597, P.598, G.599, L.601, R.602, R.603 Ligands: CLR.4 10 PLIP interactions: 4 interactions with chain C, 6 interactions with chain D Hydrophobic interactions: C:P.815, C:P.815, D:F.597, D:L.601 Salt bridges: C:K.817, C:K.817, D:R.602, D:R.603 Hydrogen bonds: D:G.599, D:R.602

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vallese, F. et al., Architecture of the human erythrocyte ankyrin-1 complex. Nat.Struct.Mol.Biol. (2022)

Release Date

2022-07-20

Peptides

Glycophorin-A: AB
Band 3 anion transport protein: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
C

D
E

Membrane

We predict this structure to be a membrane protein.
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Glycophorin-A

Band 3 anion transport protein

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