SMTL ID : 8crt.1

Local refinement of Rh trimer, glycophorin B and Band3-III transmembrane region, class 1a of erythrocyte ankyrin-1 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-1-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain G: R.432, N.433, N.642, A.645 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain H: R.432, N.433, N.642, A.645 No protein-ligand interaction detected (PLIP)

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 9 residues within 4Å: Chain E: F.87, I.96, V.99 Chain G: W.492, W.496, L.499, I.661, M.664, F.665 8 PLIP interactions: 2 interactions with chain E, 6 interactions with chain G Hydrophobic interactions: E:F.87, E:I.96, G:W.492, G:W.496, G:L.499, G:I.661, G:F.665, G:F.665 CLR.4: 9 residues within 4Å: Chain F: I.96, V.99 Chain H: W.492, F.495, W.496, L.499, I.661, M.664, F.665 9 PLIP interactions: 8 interactions with chain H, 1 interactions with chain F Hydrophobic interactions: H:W.492, H:F.495, H:W.496, H:W.496, H:L.499, H:I.661, H:F.665, H:F.665, F:I.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vallese, F. et al., Architecture of the human erythrocyte ankyrin-1 complex. Nat.Struct.Mol.Biol. (2022)

Release Date

2022-07-20

Peptides

Blood group Rh(CE) polypeptide: A
Ammonium transporter Rh type A: BC
Glycophorin-B: D
Glycophorin-A: EF
Band 3 anion transport protein: GH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

C
Q

D
P

E
B

F
D

G
C

H
E

Membrane

We predict this structure to be a membrane protein.
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Blood group Rh(CE) polypeptide

Ammonium transporter Rh type A

Glycophorin-B

Glycophorin-A

Band 3 anion transport protein

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