SMTL ID : 7v00.1

Staphylococcus epidermidis RP62a CRISPR tall effector complex with bound ATP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-1-1-1-3-mer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 15 residues within 4Å: Chain F: D.258, M.259, S.260, I.262, Q.263, I.266, Y.267, S.282, L.285, G.312, K.384, Y.582, D.587 Chain H: K.91 Ligands: ATP.2 9 PLIP interactions: 8 interactions with chain F, 1 interactions with chain H Hydrogen bonds: F:I.262, F:Q.263, F:Q.263, F:S.282 Salt bridges: F:K.384, F:K.384, H:K.91 pi-Stacking: F:Y.582, F:Y.582 ATP.2: 13 residues within 4Å: Chain F: Y.309, H.314, D.532, I.533, D.534, L.536, G.537, F.540, S.558, G.585, D.586 Chain H: K.88 Ligands: ATP.1 11 PLIP interactions: 9 interactions with chain F, 2 interactions with chain H Hydrogen bonds: F:H.314, F:D.532, F:D.534, F:D.534, F:L.536, F:G.537, F:S.558, F:D.586 pi-Stacking: F:Y.309 Salt bridges: H:K.88, H:K.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, E.M. et al., Structures of an active type III-A CRISPR effector complex. Structure (2022)

Release Date

2022-07-06

Peptides

CRISPR system Cms endoribonuclease Csm3: ABCD
CRISPR system Cms protein Csm5: E
CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A): F
CRISPR system Cms protein Csm4: H
CRISPR system Cms protein Csm2: IJK

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

H
H

I
I

J
J

K
K

CRISPR system Cms endoribonuclease Csm3

CRISPR system Cms protein Csm5

CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A)

CRISPR system Cms protein Csm4

CRISPR system Cms protein Csm2

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