SMTL ID : 7v01.1

Staphylococcus epidermidis RP62a CRISPR short effector complex with self RNA target and ATP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-1-1-1-2-mer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 16 residues within 4Å: Chain E: D.258, M.259, S.260, G.261, I.262, Q.263, I.266, S.282, L.285, E.286, G.312, G.313, K.384, Y.582, D.586, D.587 10 PLIP interactions: 9 interactions with chain E, 1 interactions with chain G Hydrogen bonds: E:I.262, E:Q.263, E:S.282, E:E.286, E:G.313, E:D.586 Salt bridges: E:K.384, G:K.91 pi-Stacking: E:Y.582, E:Y.582 ATP.2: 14 residues within 4Å: Chain E: Y.309, H.314, D.532, I.533, D.534, L.536, F.540, S.558, L.561, S.562, G.585, D.586 Chain G: K.88, K.92 10 PLIP interactions: 9 interactions with chain E, 1 interactions with chain G Hydrogen bonds: E:Y.309, E:H.314, E:D.534, E:D.534, E:L.536, E:G.537, E:S.558 pi-Stacking: E:Y.309, E:F.540 Salt bridges: G:K.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, E.M. et al., Structures of an active type III-A CRISPR effector complex. Structure (2022)

Release Date

2022-07-06

Peptides

CRISPR system Cms endoribonuclease Csm3: ABC
CRISPR system Cms protein Csm5: D
CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A): E
CRISPR system Cms protein Csm4: G
CRISPR system Cms protein Csm2: HI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

G
H

H
I

I
K

CRISPR system Cms endoribonuclease Csm3

CRISPR system Cms protein Csm5

CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A)

CRISPR system Cms protein Csm4

CRISPR system Cms protein Csm2

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