SMTL ID : 7v1c.1

Crystal structure of Omsk hemorrhagic fever virus NS5 MTase (in complex with SIN)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: N.45, M.46, G.47, L.48, D.253, V.256 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.45, A:G.47, A:L.48, A:D.253 PEG.3: 6 residues within 4Å: Chain A: R.32, R.36, L.39, R.52, R.79, R.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.32, A:R.52, A:R.209

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: R.23, S.145, R.209, S.211, T.212 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.23, A:R.23, A:S.145, A:R.209, A:S.211 Water bridges: A:S.145

1 x SFG: SINEFUNGIN(Non-covalent)

SFG.4: 17 residues within 4Å: Chain A: S.51, G.53, G.76, C.77, G.78, G.80, G.81, W.82, T.99, I.100, H.105, M.125, D.126, V.127, F.128, D.141, I.142 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:D.141 Hydrogen bonds: A:S.51, A:C.77, A:G.80, A:G.81, A:W.82, A:T.99, A:I.100, A:D.126, A:D.126, A:V.127, A:D.141, A:D.141 Water bridges: A:D.74, A:G.76, A:C.77, A:R.79, A:K.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jia, H. et al., Crystal Structures of Flavivirus NS5 Guanylyltransferase Reveal a GMP-Arginine Adduct. J.Virol. (2022)

Release Date

2022-06-15

Peptides

Core protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Core protein

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