SMTL ID : 7v1e.1

Crystal structure of Omsk hemorrhagic fever virus NS5 MTase (in complex with SAH and m7GpppAmG)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: F.128, T.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.128

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 19 residues within 4Å: Chain A: S.51, G.53, T.54, G.76, C.77, G.78, G.80, G.81, W.82, T.99, I.100, H.105, E.106, M.125, D.126, V.127, F.128, D.141, I.142 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:S.51, A:G.53, A:R.79, A:G.80, A:G.81, A:W.82, A:W.82, A:W.82, A:T.99, A:I.100, A:H.105, A:E.106, A:D.126, A:D.126, A:V.127, A:D.141 Water bridges: A:S.83

1 x V9G: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-ADENOSINE(Non-covalent)

V9G.3: 12 residues within 4Å: Chain A: K.8, L.11, N.12, C.14, K.16, F.19, R.23, S.145, S.146, P.147, S.211 Ligands: 5GP.4 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:K.8, A:K.8, A:N.12, A:N.12, A:C.14, A:C.14, A:C.14, A:K.16, A:S.211 Salt bridges: A:R.23, A:R.23 pi-Stacking: A:F.19, A:F.19

1 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.4: 2 residues within 4Å: Chain A: P.147 Ligands: V9G.3 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.144, A:D.148, A:D.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jia, H. et al., Crystal Structures of Flavivirus NS5 Guanylyltransferase Reveal a GMP-Arginine Adduct. J.Virol. (2022)

Release Date

2022-06-15

Peptides

Core protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Core protein

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