SMTL ID : 7vdq.1 (1 other biounit)

The structure of cyclin-dependent kinase 5 (CDK5) in complex with p25 and Compound 7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 64V: 2-[[7-[[2-fluoranyl-4-[3-(hydroxymethyl)pyrazol-1-yl]phenyl]amino]-1,6-naphthyridin-2-yl]-(1-methylpiperidin-4-yl)amino]ethanoic acid(Non-covalent)

64V.1: 20 residues within 4Å: Chain A: I.10, Y.15, V.18, A.31, K.33, E.51, V.64, F.80, E.81, F.82, C.83, D.84, Q.85, D.86, K.89, Q.130, N.131, L.133, A.143, D.144 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.10, A:Y.15, A:A.31, A:V.64, A:F.80, A:F.80, A:K.89, A:L.133, A:L.133, A:D.144 Hydrogen bonds: A:E.51, A:C.83, A:C.83, A:D.144 Salt bridges: A:K.33, A:D.144 pi-Cation interactions: A:K.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Daniels, M.H. et al., Discovery and Optimization of Highly Selective Inhibitors of CDK5. J.Med.Chem. (2022)

Release Date

2022-03-09

Peptides

Cyclin-dependent-like kinase 5: A
Cyclin-dependent kinase 5 activator 1, p25: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Cyclin-dependent-like kinase 5

Cyclin-dependent kinase 5 activator 1, p25

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