SMTL ID : 7vf3.1 (1 other biounit)

Plexin B1 extracellular fragment in complex with lasso-grafted PB1m7 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: D.309, D.312, R.313, N.316, R.319, P.358 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.312, A:R.313 Hydrogen bonds: A:N.316, A:R.319, A:R.319

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 6 residues within 4Å: Chain A: R.22, T.440, F.441, D.442, G.443, F.445 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.22, A:R.22, A:G.443 Water bridges: A:R.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugano-Nakamura, N. et al., De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function. Structure (2022)

Release Date

2022-08-17

Peptides

Plexin-B1: A
Uteroglobin,PB1m7 peptide,Uteroglobin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Plexin-B1

Uteroglobin,PB1m7 peptide,Uteroglobin

Related Entries With Identical Sequence