SMTL ID : 7vg7.1

Plexin B1 extracellular fragment in complex with lasso-grafted PB1m6A9 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 4 residues within 4Å: Chain A: W.382, I.385, P.423, T.426 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: D.309, D.312, R.313, N.316, R.319 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.312, A:R.313 Hydrogen bonds: A:N.316, A:R.319, A:R.319

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugano-Nakamura, N. et al., De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function. Structure (2022)

Release Date

2022-08-17

Peptides

Plexin-B1: A
Uteroglobin,PB1m6A9 peptide,Uteroglobin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Plexin-B1

Uteroglobin,PB1m6A9 peptide,Uteroglobin

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