SMTL ID : 7vi0.1 (1 other biounit)

Crystal structure of EP300 HAT domain in complex with compound 11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.7, C.8, H.99, C.102 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.8, A:H.99, A:C.102 ZN.2: 4 residues within 4Å: Chain A: C.91, C.94, C.116, C.119 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.91, A:C.94, A:C.116, A:C.119 ZN.3: 4 residues within 4Å: Chain A: C.21, C.27, C.45, C.48 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.27, A:C.45, A:C.48

1 x 6YI: (4S)-N-(3H-indazol-4-yl)-3-[1-(4-methoxyphenyl)cyclopentyl]carbonyl-1,1-bis(oxidanylidene)-1,3-thiazolidine-4-carboxamide(Non-covalent)

6YI.4: 18 residues within 4Å: Chain A: L.242, D.243, S.244, Y.258, C.282, P.283, P.284, G.287, D.288, Y.290, H.295, Q.299, K.300, I.301, P.302, R.306, L.307, W.310 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.242, A:Y.258, A:Y.258, A:H.295, A:Q.299, A:I.301, A:L.307, A:W.310, A:W.310, A:W.310, A:W.310 Hydrogen bonds: A:D.243, A:D.243, A:G.287 Water bridges: A:D.289, A:D.289 pi-Stacking: A:H.295, A:H.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kanada, R. et al., Discovery of EP300/CBP histone acetyltransferase inhibitors through scaffold hopping of 1,4-oxazepane ring. Bioorg.Med.Chem.Lett. (2022)

Release Date

2022-04-27

Peptides

Histone acetyltransferase p300: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone acetyltransferase p300

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