SMTL ID : 8gzc.2 (1 other biounit)

Crystal structure of EP300 HAT domain in complex with compound 10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.7, C.8, L.12, H.99, C.102 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.8, A:H.99, A:C.102 ZN.2: 4 residues within 4Å: Chain A: C.91, C.94, C.116, C.119 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.91, A:C.94, A:C.116, A:C.119 ZN.3: 4 residues within 4Å: Chain A: C.21, C.27, C.45, C.48 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.27, A:C.45, A:C.48

1 x KQO: (2~{R},4~{R})-4-fluoranyl-1-[1-(4-methoxyphenyl)cyclohexyl]carbonyl-~{N}-(1~{H}-pyrazolo[4,3-b]pyridin-5-yl)pyrrolidine-2-carboxamide(Non-covalent)

KQO.4: 14 residues within 4Å: Chain A: F.218, L.242, D.243, S.244, Y.258, P.284, D.288, D.289, H.295, Q.299, I.301, P.302, L.307, W.310 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.218, A:L.242, A:Y.258, A:H.295, A:I.301, A:L.307, A:W.310, A:W.310, A:W.310, A:W.310 Hydrogen bonds: A:D.243, A:D.289 Water bridges: A:E.286, A:H.295, A:H.295, A:Q.299, A:Q.299 pi-Stacking: A:H.295, A:H.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kanada, R. et al., Discovery of DS-9300: A Highly Potent, Selective, and Once-Daily Oral EP300/CBP Histone Acetyltransferase Inhibitor. J.Med.Chem. (2023)

Release Date

2023-01-11

Peptides

Histone acetyltransferase p300: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Histone acetyltransferase p300

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