- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-24-mer
- Ligands
- 48 x GOL: GLYCEROL(Non-functional Binders)
- 72 x CD: CADMIUM ION(Non-covalent)
CD.3: 1 residues within 4Å:- Chain A: D.80
Ligand excluded by PLIPCD.4: 5 residues within 4Å:- Chain A: D.127
- Chain E: D.127
- Chain I: D.127
- Ligands: CD.36, CD.68
Ligand excluded by PLIPCD.6: 4 residues within 4Å:- Chain A: E.130
- Chain E: E.130
- Ligands: CD.38, CD.70
Ligand excluded by PLIPCD.11: 1 residues within 4Å:- Chain B: D.80
Ligand excluded by PLIPCD.12: 5 residues within 4Å:- Chain B: D.127
- Chain G: D.127
- Chain L: D.127
- Ligands: CD.52, CD.92
Ligand excluded by PLIPCD.14: 4 residues within 4Å:- Chain B: E.130
- Chain G: E.130
- Ligands: CD.54, CD.94
Ligand excluded by PLIPCD.19: 1 residues within 4Å:- Chain C: D.80
Ligand excluded by PLIPCD.20: 5 residues within 4Å:- Chain C: D.127
- Chain H: D.127
- Chain J: D.127
- Ligands: CD.60, CD.76
Ligand excluded by PLIPCD.22: 4 residues within 4Å:- Chain C: E.130
- Chain H: E.130
- Ligands: CD.62, CD.78
Ligand excluded by PLIPCD.27: 1 residues within 4Å:- Chain D: D.80
Ligand excluded by PLIPCD.28: 5 residues within 4Å:- Chain D: D.127
- Chain F: D.127
- Chain K: D.127
- Ligands: CD.44, CD.84
Ligand excluded by PLIPCD.30: 4 residues within 4Å:- Chain D: E.130
- Chain F: E.130
- Ligands: CD.46, CD.86
Ligand excluded by PLIPCD.35: 1 residues within 4Å:- Chain E: D.80
Ligand excluded by PLIPCD.36: 5 residues within 4Å:- Chain A: D.127
- Chain E: D.127
- Chain I: D.127
- Ligands: CD.4, CD.68
Ligand excluded by PLIPCD.38: 4 residues within 4Å:- Chain E: E.130
- Chain I: E.130
- Ligands: CD.6, CD.70
Ligand excluded by PLIPCD.43: 1 residues within 4Å:- Chain F: D.80
Ligand excluded by PLIPCD.44: 5 residues within 4Å:- Chain D: D.127
- Chain F: D.127
- Chain K: D.127
- Ligands: CD.28, CD.84
Ligand excluded by PLIPCD.46: 4 residues within 4Å:- Chain F: E.130
- Chain K: E.130
- Ligands: CD.30, CD.86
Ligand excluded by PLIPCD.51: 1 residues within 4Å:- Chain G: D.80
Ligand excluded by PLIPCD.52: 5 residues within 4Å:- Chain B: D.127
- Chain G: D.127
- Chain L: D.127
- Ligands: CD.12, CD.92
Ligand excluded by PLIPCD.54: 4 residues within 4Å:- Chain G: E.130
- Chain L: E.130
- Ligands: CD.14, CD.94
Ligand excluded by PLIPCD.59: 1 residues within 4Å:- Chain H: D.80
Ligand excluded by PLIPCD.60: 5 residues within 4Å:- Chain C: D.127
- Chain H: D.127
- Chain J: D.127
- Ligands: CD.20, CD.76
Ligand excluded by PLIPCD.62: 4 residues within 4Å:- Chain H: E.130
- Chain J: E.130
- Ligands: CD.22, CD.78
Ligand excluded by PLIPCD.67: 1 residues within 4Å:- Chain I: D.80
Ligand excluded by PLIPCD.68: 5 residues within 4Å:- Chain A: D.127
- Chain E: D.127
- Chain I: D.127
- Ligands: CD.4, CD.36
Ligand excluded by PLIPCD.70: 4 residues within 4Å:- Chain A: E.130
- Chain I: E.130
- Ligands: CD.6, CD.38
Ligand excluded by PLIPCD.75: 1 residues within 4Å:- Chain J: D.80
Ligand excluded by PLIPCD.76: 5 residues within 4Å:- Chain C: D.127
- Chain H: D.127
- Chain J: D.127
- Ligands: CD.20, CD.60
Ligand excluded by PLIPCD.78: 4 residues within 4Å:- Chain C: E.130
- Chain J: E.130
- Ligands: CD.22, CD.62
Ligand excluded by PLIPCD.83: 1 residues within 4Å:- Chain K: D.80
Ligand excluded by PLIPCD.84: 5 residues within 4Å:- Chain D: D.127
- Chain F: D.127
- Chain K: D.127
- Ligands: CD.28, CD.44
Ligand excluded by PLIPCD.86: 4 residues within 4Å:- Chain D: E.130
- Chain K: E.130
- Ligands: CD.30, CD.46
Ligand excluded by PLIPCD.91: 1 residues within 4Å:- Chain L: D.80
Ligand excluded by PLIPCD.92: 5 residues within 4Å:- Chain B: D.127
- Chain G: D.127
- Chain L: D.127
- Ligands: CD.12, CD.52
Ligand excluded by PLIPCD.94: 4 residues within 4Å:- Chain B: E.130
- Chain L: E.130
- Ligands: CD.14, CD.54
Ligand excluded by PLIPCD.99: 1 residues within 4Å:- Chain M: D.80
Ligand excluded by PLIPCD.100: 5 residues within 4Å:- Chain M: D.127
- Chain Q: D.127
- Chain U: D.127
- Ligands: CD.132, CD.164
Ligand excluded by PLIPCD.102: 4 residues within 4Å:- Chain M: E.130
- Chain Q: E.130
- Ligands: CD.134, CD.166
Ligand excluded by PLIPCD.107: 1 residues within 4Å:- Chain N: D.80
Ligand excluded by PLIPCD.108: 5 residues within 4Å:- Chain N: D.127
- Chain S: D.127
- Chain X: D.127
- Ligands: CD.148, CD.188
Ligand excluded by PLIPCD.110: 4 residues within 4Å:- Chain N: E.130
- Chain S: E.130
- Ligands: CD.150, CD.190
Ligand excluded by PLIPCD.115: 1 residues within 4Å:- Chain O: D.80
Ligand excluded by PLIPCD.116: 5 residues within 4Å:- Chain O: D.127
- Chain T: D.127
- Chain V: D.127
- Ligands: CD.156, CD.172
Ligand excluded by PLIPCD.118: 4 residues within 4Å:- Chain O: E.130
- Chain T: E.130
- Ligands: CD.158, CD.174
Ligand excluded by PLIPCD.123: 1 residues within 4Å:- Chain P: D.80
Ligand excluded by PLIPCD.124: 5 residues within 4Å:- Chain P: D.127
- Chain R: D.127
- Chain W: D.127
- Ligands: CD.140, CD.180
Ligand excluded by PLIPCD.126: 4 residues within 4Å:- Chain P: E.130
- Chain R: E.130
- Ligands: CD.142, CD.182
Ligand excluded by PLIPCD.131: 1 residues within 4Å:- Chain Q: D.80
Ligand excluded by PLIPCD.132: 5 residues within 4Å:- Chain M: D.127
- Chain Q: D.127
- Chain U: D.127
- Ligands: CD.100, CD.164
Ligand excluded by PLIPCD.134: 4 residues within 4Å:- Chain Q: E.130
- Chain U: E.130
- Ligands: CD.102, CD.166
Ligand excluded by PLIPCD.139: 1 residues within 4Å:- Chain R: D.80
Ligand excluded by PLIPCD.140: 5 residues within 4Å:- Chain P: D.127
- Chain R: D.127
- Chain W: D.127
- Ligands: CD.124, CD.180
Ligand excluded by PLIPCD.142: 4 residues within 4Å:- Chain R: E.130
- Chain W: E.130
- Ligands: CD.126, CD.182
Ligand excluded by PLIPCD.147: 1 residues within 4Å:- Chain S: D.80
Ligand excluded by PLIPCD.148: 5 residues within 4Å:- Chain N: D.127
- Chain S: D.127
- Chain X: D.127
- Ligands: CD.108, CD.188
Ligand excluded by PLIPCD.150: 4 residues within 4Å:- Chain S: E.130
- Chain X: E.130
- Ligands: CD.110, CD.190
Ligand excluded by PLIPCD.155: 1 residues within 4Å:- Chain T: D.80
Ligand excluded by PLIPCD.156: 5 residues within 4Å:- Chain O: D.127
- Chain T: D.127
- Chain V: D.127
- Ligands: CD.116, CD.172
Ligand excluded by PLIPCD.158: 4 residues within 4Å:- Chain T: E.130
- Chain V: E.130
- Ligands: CD.118, CD.174
Ligand excluded by PLIPCD.163: 1 residues within 4Å:- Chain U: D.80
Ligand excluded by PLIPCD.164: 5 residues within 4Å:- Chain M: D.127
- Chain Q: D.127
- Chain U: D.127
- Ligands: CD.100, CD.132
Ligand excluded by PLIPCD.166: 4 residues within 4Å:- Chain M: E.130
- Chain U: E.130
- Ligands: CD.102, CD.134
Ligand excluded by PLIPCD.171: 1 residues within 4Å:- Chain V: D.80
Ligand excluded by PLIPCD.172: 5 residues within 4Å:- Chain O: D.127
- Chain T: D.127
- Chain V: D.127
- Ligands: CD.116, CD.156
Ligand excluded by PLIPCD.174: 4 residues within 4Å:- Chain O: E.130
- Chain V: E.130
- Ligands: CD.118, CD.158
Ligand excluded by PLIPCD.179: 1 residues within 4Å:- Chain W: D.80
Ligand excluded by PLIPCD.180: 5 residues within 4Å:- Chain P: D.127
- Chain R: D.127
- Chain W: D.127
- Ligands: CD.124, CD.140
Ligand excluded by PLIPCD.182: 4 residues within 4Å:- Chain P: E.130
- Chain W: E.130
- Ligands: CD.126, CD.142
Ligand excluded by PLIPCD.187: 1 residues within 4Å:- Chain X: D.80
Ligand excluded by PLIPCD.188: 5 residues within 4Å:- Chain N: D.127
- Chain S: D.127
- Chain X: D.127
- Ligands: CD.108, CD.148
Ligand excluded by PLIPCD.190: 4 residues within 4Å:- Chain N: E.130
- Chain X: E.130
- Ligands: CD.110, CD.150
Ligand excluded by PLIP- 48 x AU: GOLD ION(Non-covalent)
AU.5: 4 residues within 4Å:- Chain A: D.122, P.123, C.126
- Ligands: AU.7
Ligand excluded by PLIPAU.7: 5 residues within 4Å:- Chain A: H.114, S.118, C.126, E.130
- Ligands: AU.5
Ligand excluded by PLIPAU.13: 4 residues within 4Å:- Chain B: D.122, P.123, C.126
- Ligands: AU.15
Ligand excluded by PLIPAU.15: 5 residues within 4Å:- Chain B: H.114, S.118, C.126, E.130
- Ligands: AU.13
Ligand excluded by PLIPAU.21: 4 residues within 4Å:- Chain C: D.122, P.123, C.126
- Ligands: AU.23
Ligand excluded by PLIPAU.23: 5 residues within 4Å:- Chain C: H.114, S.118, C.126, E.130
- Ligands: AU.21
Ligand excluded by PLIPAU.29: 4 residues within 4Å:- Chain D: D.122, P.123, C.126
- Ligands: AU.31
Ligand excluded by PLIPAU.31: 5 residues within 4Å:- Chain D: H.114, S.118, C.126, E.130
- Ligands: AU.29
Ligand excluded by PLIPAU.37: 4 residues within 4Å:- Chain E: D.122, P.123, C.126
- Ligands: AU.39
Ligand excluded by PLIPAU.39: 5 residues within 4Å:- Chain E: H.114, S.118, C.126, E.130
- Ligands: AU.37
Ligand excluded by PLIPAU.45: 4 residues within 4Å:- Chain F: D.122, P.123, C.126
- Ligands: AU.47
Ligand excluded by PLIPAU.47: 5 residues within 4Å:- Chain F: H.114, S.118, C.126, E.130
- Ligands: AU.45
Ligand excluded by PLIPAU.53: 4 residues within 4Å:- Chain G: D.122, P.123, C.126
- Ligands: AU.55
Ligand excluded by PLIPAU.55: 5 residues within 4Å:- Chain G: H.114, S.118, C.126, E.130
- Ligands: AU.53
Ligand excluded by PLIPAU.61: 4 residues within 4Å:- Chain H: D.122, P.123, C.126
- Ligands: AU.63
Ligand excluded by PLIPAU.63: 5 residues within 4Å:- Chain H: H.114, S.118, C.126, E.130
- Ligands: AU.61
Ligand excluded by PLIPAU.69: 4 residues within 4Å:- Chain I: D.122, P.123, C.126
- Ligands: AU.71
Ligand excluded by PLIPAU.71: 5 residues within 4Å:- Chain I: H.114, S.118, C.126, E.130
- Ligands: AU.69
Ligand excluded by PLIPAU.77: 4 residues within 4Å:- Chain J: D.122, P.123, C.126
- Ligands: AU.79
Ligand excluded by PLIPAU.79: 5 residues within 4Å:- Chain J: H.114, S.118, C.126, E.130
- Ligands: AU.77
Ligand excluded by PLIPAU.85: 4 residues within 4Å:- Chain K: D.122, P.123, C.126
- Ligands: AU.87
Ligand excluded by PLIPAU.87: 5 residues within 4Å:- Chain K: H.114, S.118, C.126, E.130
- Ligands: AU.85
Ligand excluded by PLIPAU.93: 4 residues within 4Å:- Chain L: D.122, P.123, C.126
- Ligands: AU.95
Ligand excluded by PLIPAU.95: 5 residues within 4Å:- Chain L: H.114, S.118, C.126, E.130
- Ligands: AU.93
Ligand excluded by PLIPAU.101: 4 residues within 4Å:- Chain M: D.122, P.123, C.126
- Ligands: AU.103
Ligand excluded by PLIPAU.103: 5 residues within 4Å:- Chain M: H.114, S.118, C.126, E.130
- Ligands: AU.101
Ligand excluded by PLIPAU.109: 4 residues within 4Å:- Chain N: D.122, P.123, C.126
- Ligands: AU.111
Ligand excluded by PLIPAU.111: 5 residues within 4Å:- Chain N: H.114, S.118, C.126, E.130
- Ligands: AU.109
Ligand excluded by PLIPAU.117: 4 residues within 4Å:- Chain O: D.122, P.123, C.126
- Ligands: AU.119
Ligand excluded by PLIPAU.119: 5 residues within 4Å:- Chain O: H.114, S.118, C.126, E.130
- Ligands: AU.117
Ligand excluded by PLIPAU.125: 4 residues within 4Å:- Chain P: D.122, P.123, C.126
- Ligands: AU.127
Ligand excluded by PLIPAU.127: 5 residues within 4Å:- Chain P: H.114, S.118, C.126, E.130
- Ligands: AU.125
Ligand excluded by PLIPAU.133: 4 residues within 4Å:- Chain Q: D.122, P.123, C.126
- Ligands: AU.135
Ligand excluded by PLIPAU.135: 5 residues within 4Å:- Chain Q: H.114, S.118, C.126, E.130
- Ligands: AU.133
Ligand excluded by PLIPAU.141: 4 residues within 4Å:- Chain R: D.122, P.123, C.126
- Ligands: AU.143
Ligand excluded by PLIPAU.143: 5 residues within 4Å:- Chain R: H.114, S.118, C.126, E.130
- Ligands: AU.141
Ligand excluded by PLIPAU.149: 4 residues within 4Å:- Chain S: D.122, P.123, C.126
- Ligands: AU.151
Ligand excluded by PLIPAU.151: 5 residues within 4Å:- Chain S: H.114, S.118, C.126, E.130
- Ligands: AU.149
Ligand excluded by PLIPAU.157: 4 residues within 4Å:- Chain T: D.122, P.123, C.126
- Ligands: AU.159
Ligand excluded by PLIPAU.159: 5 residues within 4Å:- Chain T: H.114, S.118, C.126, E.130
- Ligands: AU.157
Ligand excluded by PLIPAU.165: 4 residues within 4Å:- Chain U: D.122, P.123, C.126
- Ligands: AU.167
Ligand excluded by PLIPAU.167: 5 residues within 4Å:- Chain U: H.114, S.118, C.126, E.130
- Ligands: AU.165
Ligand excluded by PLIPAU.173: 4 residues within 4Å:- Chain V: D.122, P.123, C.126
- Ligands: AU.175
Ligand excluded by PLIPAU.175: 5 residues within 4Å:- Chain V: H.114, S.118, C.126, E.130
- Ligands: AU.173
Ligand excluded by PLIPAU.181: 4 residues within 4Å:- Chain W: D.122, P.123, C.126
- Ligands: AU.183
Ligand excluded by PLIPAU.183: 5 residues within 4Å:- Chain W: H.114, S.118, C.126, E.130
- Ligands: AU.181
Ligand excluded by PLIPAU.189: 4 residues within 4Å:- Chain X: D.122, P.123, C.126
- Ligands: AU.191
Ligand excluded by PLIPAU.191: 5 residues within 4Å:- Chain X: H.114, S.118, C.126, E.130
- Ligands: AU.189
Ligand excluded by PLIP- 24 x SO4: SULFATE ION(Non-functional Binders)
SO4.8: 2 residues within 4Å:- Chain E: Q.6, N.7
Ligand excluded by PLIPSO4.16: 2 residues within 4Å:- Chain G: Q.6, N.7
Ligand excluded by PLIPSO4.24: 2 residues within 4Å:- Chain H: Q.6, N.7
Ligand excluded by PLIPSO4.32: 2 residues within 4Å:- Chain F: Q.6, N.7
Ligand excluded by PLIPSO4.40: 2 residues within 4Å:- Chain I: Q.6, N.7
Ligand excluded by PLIPSO4.48: 2 residues within 4Å:- Chain K: Q.6, N.7
Ligand excluded by PLIPSO4.56: 2 residues within 4Å:- Chain L: Q.6, N.7
Ligand excluded by PLIPSO4.64: 2 residues within 4Å:- Chain J: Q.6, N.7
Ligand excluded by PLIPSO4.72: 2 residues within 4Å:- Chain A: Q.6, N.7
Ligand excluded by PLIPSO4.80: 2 residues within 4Å:- Chain C: Q.6, N.7
Ligand excluded by PLIPSO4.88: 2 residues within 4Å:- Chain D: Q.6, N.7
Ligand excluded by PLIPSO4.96: 2 residues within 4Å:- Chain B: Q.6, N.7
Ligand excluded by PLIPSO4.104: 2 residues within 4Å:- Chain Q: Q.6, N.7
Ligand excluded by PLIPSO4.112: 2 residues within 4Å:- Chain S: Q.6, N.7
Ligand excluded by PLIPSO4.120: 2 residues within 4Å:- Chain T: Q.6, N.7
Ligand excluded by PLIPSO4.128: 2 residues within 4Å:- Chain R: Q.6, N.7
Ligand excluded by PLIPSO4.136: 2 residues within 4Å:- Chain U: Q.6, N.7
Ligand excluded by PLIPSO4.144: 2 residues within 4Å:- Chain W: Q.6, N.7
Ligand excluded by PLIPSO4.152: 2 residues within 4Å:- Chain X: Q.6, N.7
Ligand excluded by PLIPSO4.160: 2 residues within 4Å:- Chain V: Q.6, N.7
Ligand excluded by PLIPSO4.168: 2 residues within 4Å:- Chain M: Q.6, N.7
Ligand excluded by PLIPSO4.176: 2 residues within 4Å:- Chain O: Q.6, N.7
Ligand excluded by PLIPSO4.184: 2 residues within 4Å:- Chain P: Q.6, N.7
Ligand excluded by PLIPSO4.192: 2 residues within 4Å:- Chain N: Q.6, N.7
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lu, C. et al., Design of a gold clustering site in an engineered apo-ferritin cage. Commun Chem (2022)
- Release Date
- 2022-06-08
- Peptides
- Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-24-mer
- Ligands
- 48 x GOL: GLYCEROL(Non-functional Binders)
- 72 x CD: CADMIUM ION(Non-covalent)
- 48 x AU: GOLD ION(Non-covalent)
- 24 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lu, C. et al., Design of a gold clustering site in an engineered apo-ferritin cage. Commun Chem (2022)
- Release Date
- 2022-06-08
- Peptides
- Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A