SMTL ID : 7vlg.1

Crystal structure of Zika NS2B-NS3 protease with compound MI2201

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: D.36, E.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.37

1 x 7PZ: 1-[(5~{R},8~{R},15~{S},18~{S})-15,18-bis(4-azanylbutyl)-4,7,14,17,20-pentakis(oxidanylidene)-5-propan-2-yl-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine(Non-covalent)

7PZ.2: 19 residues within 4Å: Chain A: G.39, D.40, F.41 Chain B: H.52, D.76, D.130, Y.131, P.132, A.133, S.136, Y.151, G.152, N.153, G.154, V.155, V.156, G.160, S.161, Y.162 17 PLIP interactions: 14 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:Y.151, B:Y.162, B:Y.162 Hydrogen bonds: B:D.76, B:D.130, B:S.136, B:G.152, B:N.153, B:G.154, B:G.160, B:Y.162, A:D.40 Water bridges: B:A.133, B:G.160, A:F.41, A:F.41 Salt bridges: B:D.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huber, S. et al., Structure-Based Optimization and Characterization of Macrocyclic Zika Virus NS2B-NS3 Protease Inhibitors. J.Med.Chem. (2022)

Release Date

2022-08-10

Peptides

Serine protease subunit NS2B: A
NS3 protease: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

NS3 protease

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