SMTL ID : 7vlx.1

Cryo-EM structures of Listeria monocytogenes man-PTS

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

3 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.1: 12 residues within 4Å: Chain A: N.63, I.64, G.65 Chain B: Q.23, W.26, Q.32, N.66, T.67, H.68, P.69, D.113, W.117 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.23, B:Q.23, B:W.26, B:N.66, B:D.113, B:W.117, A:G.65 MAN.2: 13 residues within 4Å: Chain C: N.63, I.64, G.65, A.66 Chain D: Q.23, W.26, Q.32, N.66, T.67, H.68, P.69, D.113, W.117 8 PLIP interactions: 2 interactions with chain C, 6 interactions with chain D Hydrogen bonds: C:G.65, C:A.66, D:Q.23, D:Q.23, D:W.26, D:N.66, D:D.113, D:W.117 MAN.3: 12 residues within 4Å: Chain E: N.63, I.64, G.65 Chain F: Q.23, W.26, Q.32, N.66, T.67, H.68, P.69, D.113, W.117 7 PLIP interactions: 6 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:Q.23, F:Q.23, F:W.26, F:N.66, F:D.113, F:W.117, E:G.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, L. et al., Structural Basis of Pore Formation in the Mannose Phosphotransferase System by Pediocin PA-1. Appl.Environ.Microbiol. (2022)

Release Date

2021-12-01

Peptides

Mannose/fructose/sorbose family PTS transporter subunit IIC: ACE
PTS mannose family transporter subunit IID: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Y

C
A

E
C

B
Z

D
B

F
D

Membrane

We predict this structure to be a membrane protein.
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Mannose/fructose/sorbose family PTS transporter subunit IIC

PTS mannose family transporter subunit IID

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