SMTL ID : 7vly.1

Cryo-EM structure of Listeria monocytogenes man-PTS complexed with pediocin PA-1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

3 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.1: 13 residues within 4Å: Chain A: N.63, I.64, G.65 Chain B: Q.23, W.26, Q.32, N.66, T.67, H.68, P.69, A.109, D.113, W.117 10 PLIP interactions: 7 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.23, B:Q.23, B:Q.32, B:N.66, B:W.117, A:G.65, A:G.65, A:G.65 Water bridges: B:A.109, B:D.113 MAN.2: 13 residues within 4Å: Chain D: N.63, I.64, G.65 Chain E: Q.23, W.26, Q.32, N.66, T.67, H.68, P.69, A.109, D.113, W.117 9 PLIP interactions: 7 interactions with chain E, 2 interactions with chain D Hydrogen bonds: E:Q.23, E:W.26, E:Q.32, E:N.66, E:W.117, D:G.65, D:G.65 Water bridges: E:A.109, E:D.113 MAN.3: 13 residues within 4Å: Chain G: N.63, I.64, G.65 Chain H: Q.23, W.26, Q.32, N.66, T.67, H.68, P.69, A.109, D.113, W.117 9 PLIP interactions: 7 interactions with chain H, 2 interactions with chain G Hydrogen bonds: H:Q.23, H:Q.23, H:W.26, H:N.66, H:W.117, G:G.65, G:G.65 Water bridges: H:A.109, H:D.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, L. et al., Structural Basis of Pore Formation in the Mannose Phosphotransferase System by Pediocin PA-1. Appl.Environ.Microbiol. (2022)

Release Date

2021-12-01

Peptides

Mannose/fructose/sorbose family PTS transporter subunit IIC: ADG
PTS mannose family transporter subunit IID: BEH
Bacteriocin pediocin PA-1: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Y

D
C

G
F

B
Z

E
D

H
G

C
A

F
E

I
H

Membrane

We predict this structure to be a membrane protein.
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Mannose/fructose/sorbose family PTS transporter subunit IIC

PTS mannose family transporter subunit IID

Bacteriocin pediocin PA-1

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