SMTL ID : 7vy0.2 (3 other biounits)

Coxsackievirus B3 full particle at pH7.4 (VP3-234N)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 12 residues within 4Å: Chain A: V.92, T.94, R.95, L.114, I.141, Y.143, V.167, M.178, I.180, L.183, Y.189, M.213 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.92, A:L.114, A:Y.143, A:V.167, A:I.180, A:L.183 Hydrogen bonds: A:T.94, A:T.94 Salt bridges: A:R.95 PLM.2: 12 residues within 4Å: Chain E: V.92, T.94, R.95, L.114, I.141, Y.143, V.167, M.178, I.180, L.183, Y.189, M.213 9 PLIP interactions: 9 interactions with chain E Hydrophobic interactions: E:V.92, E:L.114, E:Y.143, E:V.167, E:I.180, E:L.183 Hydrogen bonds: E:T.94, E:T.94 Salt bridges: E:R.95 PLM.3: 12 residues within 4Å: Chain I: V.92, T.94, R.95, L.114, I.141, Y.143, V.167, M.178, I.180, L.183, Y.189, M.213 9 PLIP interactions: 9 interactions with chain I Hydrophobic interactions: I:V.92, I:L.114, I:Y.143, I:V.167, I:I.180, I:L.183 Hydrogen bonds: I:T.94, I:T.94 Salt bridges: I:R.95 PLM.4: 12 residues within 4Å: Chain M: V.92, T.94, R.95, L.114, I.141, Y.143, V.167, M.178, I.180, L.183, Y.189, M.213 9 PLIP interactions: 9 interactions with chain M Hydrophobic interactions: M:V.92, M:L.114, M:Y.143, M:V.167, M:I.180, M:L.183 Hydrogen bonds: M:T.94, M:T.94 Salt bridges: M:R.95 PLM.5: 12 residues within 4Å: Chain Q: V.92, T.94, R.95, L.114, I.141, Y.143, V.167, M.178, I.180, L.183, Y.189, M.213 9 PLIP interactions: 9 interactions with chain Q Hydrophobic interactions: Q:V.92, Q:L.114, Q:Y.143, Q:V.167, Q:I.180, Q:L.183 Hydrogen bonds: Q:T.94, Q:T.94 Salt bridges: Q:R.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Q. et al., Molecular basis of differential receptor usage for naturally occurring CD55-binding and -nonbinding coxsackievirus B3 strains. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-01-19

Peptides

Capsid protein VP1: AEIMQ
Capsid protein VP2: BFJNR
Capsid protein VP3: CGKOS
Capsid protein VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

B
B

F
B

J
B

N
B

R
B

C
C

G
C

K
C

O
C

S
C

D
D

H
D

L
D

P
D

T
D

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4

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