SMTL ID : 7vy6.2 (3 other biounits)

Coxsackievirus B3(VP3-234N) incubate with CD55 at pH7.4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-5-5-5-mer

Ligands

5 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 8 residues within 4Å: Chain A: T.94, R.95, L.114, L.116, Y.143, V.167, Y.189, M.213 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.114, A:Y.143, A:Y.143, A:Y.143, A:V.167, A:Y.189 Salt bridges: A:R.95 PLM.2: 8 residues within 4Å: Chain F: T.94, R.95, L.114, L.116, Y.143, V.167, Y.189, M.213 7 PLIP interactions: 7 interactions with chain F Hydrophobic interactions: F:L.114, F:Y.143, F:Y.143, F:Y.143, F:V.167, F:Y.189 Salt bridges: F:R.95 PLM.3: 8 residues within 4Å: Chain K: T.94, R.95, L.114, L.116, Y.143, V.167, Y.189, M.213 7 PLIP interactions: 7 interactions with chain K Hydrophobic interactions: K:L.114, K:Y.143, K:Y.143, K:Y.143, K:V.167, K:Y.189 Salt bridges: K:R.95 PLM.4: 8 residues within 4Å: Chain P: T.94, R.95, L.114, L.116, Y.143, V.167, Y.189, M.213 7 PLIP interactions: 7 interactions with chain P Hydrophobic interactions: P:L.114, P:Y.143, P:Y.143, P:Y.143, P:V.167, P:Y.189 Salt bridges: P:R.95 PLM.5: 8 residues within 4Å: Chain U: T.94, R.95, L.114, L.116, Y.143, V.167, Y.189, M.213 7 PLIP interactions: 7 interactions with chain U Hydrophobic interactions: U:L.114, U:Y.143, U:Y.143, U:Y.143, U:V.167, U:Y.189 Salt bridges: U:R.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Q. et al., Molecular basis of differential receptor usage for naturally occurring CD55-binding and -nonbinding coxsackievirus B3 strains. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-01-19

Peptides

Capsid protein VP1: AFKPU
Capsid protein VP2: BGLQV
Capsid protein VP3: CHMRW
Capsid protein VP4: DINSX
Complement decay-accelerating factor: EJOTY

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
A

K
A

P
A

U
A

B
B

G
B

L
B

Q
B

V
B

C
C

H
C

M
C

R
C

W
C

D
D

I
D

N
D

S
D

X
D

E
E

J
E

O
E

T
E

Y
E

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4

Complement decay-accelerating factor

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