SMTL ID : 7vy5.3 (3 other biounits)

Coxsackievirus B3 (VP3-234Q) incubation with CD55 at pH7.4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-6-mer

Ligands

6 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 13 residues within 4Å: Chain A: L.80, P.82, L.104, I.129, Y.131, S.154, V.155, M.166, I.168, Y.177, N.179, L.204 Chain C: M.25 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.82, A:L.104, A:Y.131, A:Y.131, A:V.155, A:I.168, A:I.168, A:Y.177, A:L.204 Salt bridges: A:R.83 PLM.2: 13 residues within 4Å: Chain F: L.80, P.82, L.104, I.129, Y.131, S.154, V.155, M.166, I.168, Y.177, N.179, L.204 Chain H: M.25 10 PLIP interactions: 10 interactions with chain F Hydrophobic interactions: F:P.82, F:L.104, F:Y.131, F:Y.131, F:V.155, F:I.168, F:I.168, F:Y.177, F:L.204 Salt bridges: F:R.83 PLM.3: 13 residues within 4Å: Chain K: L.80, P.82, L.104, I.129, Y.131, S.154, V.155, M.166, I.168, Y.177, N.179, L.204 Chain M: M.25 10 PLIP interactions: 10 interactions with chain K Hydrophobic interactions: K:P.82, K:L.104, K:Y.131, K:Y.131, K:V.155, K:I.168, K:I.168, K:Y.177, K:L.204 Salt bridges: K:R.83 PLM.4: 13 residues within 4Å: Chain P: L.80, P.82, L.104, I.129, Y.131, S.154, V.155, M.166, I.168, Y.177, N.179, L.204 Chain R: M.25 10 PLIP interactions: 10 interactions with chain P Hydrophobic interactions: P:P.82, P:L.104, P:Y.131, P:Y.131, P:V.155, P:I.168, P:I.168, P:Y.177, P:L.204 Salt bridges: P:R.83 PLM.5: 13 residues within 4Å: Chain U: L.80, P.82, L.104, I.129, Y.131, S.154, V.155, M.166, I.168, Y.177, N.179, L.204 Chain W: M.25 10 PLIP interactions: 10 interactions with chain U Hydrophobic interactions: U:P.82, U:L.104, U:Y.131, U:Y.131, U:V.155, U:I.168, U:I.168, U:Y.177, U:L.204 Salt bridges: U:R.83 PLM.6: 13 residues within 4Å: Chain 1: M.25 Chain Z: L.80, P.82, L.104, I.129, Y.131, S.154, V.155, M.166, I.168, Y.177, N.179, L.204 10 PLIP interactions: 10 interactions with chain Z Hydrophobic interactions: Z:P.82, Z:L.104, Z:Y.131, Z:Y.131, Z:V.155, Z:I.168, Z:I.168, Z:Y.177, Z:L.204 Salt bridges: Z:R.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Q. et al., Molecular basis of differential receptor usage for naturally occurring CD55-binding and -nonbinding coxsackievirus B3 strains. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-01-19

Peptides

Capsid protein VP1: AFKPUZ
Capsid protein VP2: BGLQV0
Capsid protein VP3: CHMRW1
Genome polyprotein: DINSX2
Complement decay-accelerating factor: EJOTY3

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
A

K
A

P
A

U
A

Z
A

B
B

G
B

L
B

Q
B

V
B

0
B

C
C

H
C

M
C

R
C

W
C

1
C

D
D

I
D

N
D

S
D

X
D

2
D

E
E

J
E

O
E

T
E

Y
E

3
E

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Genome polyprotein

Complement decay-accelerating factor

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