SMTL ID : 7vzp.1 (1 other biounit)

FAD-dpendent Glucose Dehydrogenase from Aspergillus oryzae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 40 residues within 4Å: Chain A: G.13, G.14, G.15, T.16, S.17, L.36, E.37, A.38, Y.54, F.58, W.64, R.82, G.84, K.85, A.86, G.89, T.90, S.91, N.94, G.95, M.96, A.97, T.234, T.235, A.236, S.275, A.276, G.277, R.280, I.284, F.505, H.506, D.538, A.539, H.549, L.550, V.551, L.554 Ligands: 1PE.2, 1PE.3 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:F.58, A:T.90, A:F.505, A:F.505 Hydrogen bonds: A:G.14, A:T.16, A:T.16, A:S.17, A:A.38, A:G.84, A:A.86, A:T.90, A:N.94, A:G.95, A:A.97, A:A.97, A:A.236, A:A.236, A:A.539, A:H.549, A:L.550, A:V.551 Water bridges: A:G.15, A:G.18, A:T.90, A:T.90, A:F.505, A:S.552

3 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.2: 13 residues within 4Å: Chain A: W.64, Q.65, Q.67, A.236, R.280, L.283, I.284, L.287, P.433, T.434, A.435, P.436 Ligands: FAD.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.67, A:A.236, A:R.280 Water bridges: A:Q.67 1PE.3: 9 residues within 4Å: Chain A: Y.54, G.95, Y.200, N.319, L.402, H.404, E.414, H.549 Ligands: FAD.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.54 Water bridges: A:H.549 1PE.4: 11 residues within 4Å: Chain A: E.115, G.116, W.117, D.121, Y.125, N.524, R.525, R.560, D.563, L.564, E.567 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.524, A:N.524, A:R.560, A:R.560 Water bridges: A:D.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakajima, Y., Conformational change of catalytic residue in reduced enzyme of FAD-dependent Glucose Dehydrogenase at pH6.5. To Be Published

Release Date

2022-11-16

Peptides

GMC oxidoreductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GMC oxidoreductase

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