SMTL ID : 7wc7.1

Crystal structure of serotonin 2A receptor in complex with lisuride

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: E.207, D.211 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.207, A:E.207, A:D.211

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 10 residues within 4Å: Chain A: I.314, T.315, M.318, C.326, N.327, V.330, I.331, L.334, F.338 Ligands: OLC.8 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.314, A:M.318, A:V.330, A:I.331, A:L.334, A:F.338 Hydrogen bonds: A:N.327

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 5 residues within 4Å: Chain A: W.206, N.210, K.274, N.278, Q.282 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.274, A:N.278, A:Q.282

5 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.4: 8 residues within 4Å: Chain A: I.140, P.143, I.144, F.147, F.168, I.171, G.172, V.175 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.147, A:F.147, A:F.168 Hydrogen bonds: A:F.168 OLC.5: 9 residues within 4Å: Chain A: P.78, S.79, K.80, L.81, V.84, Y.87, P.145, L.149 Ligands: OLC.6 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:K.80, A:L.81, A:V.84, A:Y.87, A:P.145, A:L.149 Hydrogen bonds: A:S.79 OLC.6: 6 residues within 4Å: Chain A: I.52, Y.87, L.91, F.127, W.134 Ligands: OLC.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.52, A:I.52, A:F.127, A:W.134 Hydrogen bonds: A:Y.87 OLC.7: 9 residues within 4Å: Chain A: E.7, K.8, S.11, L.14, I.69, G.72, Y.73, N.336, W.340 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:K.8, A:L.14, A:I.69, A:Y.73, A:W.340 Hydrogen bonds: A:E.7, A:N.336 OLC.8: 2 residues within 4Å: Chain A: N.327 Ligands: CLR.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.327

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 5 residues within 4Å: Chain A: K.157, S.160, L.162, G.332, N.336 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.160 PEG.10: 4 residues within 4Å: Chain A: S.79, F.156, E.158, G.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.158, A:G.159 PEG.11: 6 residues within 4Å: Chain A: N.41, T.43, N.44, V.297, F.356, N.357 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.41, A:N.357

1 x H8G: N,N-diethyl-N'-[(8alpha)-6-methyl-9,10-didehydroergolin-8-yl]urea(Non-covalent)

H8G.12: 16 residues within 4Å: Chain A: W.85, I.86, D.89, V.90, S.93, C.161, L.163, V.169, G.172, S.176, W.309, F.312, F.313, N.316, V.339, Y.343 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:W.85, A:W.85, A:D.89, A:V.90, A:L.163, A:V.169, A:F.312, A:F.313 Hydrogen bonds: A:D.89, A:G.172, A:S.176, A:Y.343 Salt bridges: A:D.89 pi-Stacking: A:F.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, D. et al., Structure-based discovery of nonhallucinogenic psychedelic analogs. Science (2022)

Release Date

2022-01-26

Peptides

5-hydroxytryptamine receptor 2A,5-hydroxytryptamine receptor 2A,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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5-hydroxytryptamine receptor 2A,5-hydroxytryptamine receptor 2A,Soluble cytochrome b562

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