SMTL ID : 7wgl.2 (1 other biounit)

X-ray structure of human PPAR delta ligand binding domain-bezafibrate co-crystals obtained by co-crystallization

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 7 residues within 4Å: Chain A: S.106, S.107, L.108, F.109, L.110, N.111, Q.113 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.109 Hydrogen bonds: A:L.110, A:Q.113 Water bridges: A:Q.113

1 x PEM: 2-[P-[2-P-CHLOROBENZAMIDO)ETHYL]PHENOXY]-2-METHYLPROPIONIC ACID(Non-covalent)

PEM.2: 23 residues within 4Å: Chain A: W.63, V.80, F.81, R.83, C.84, Q.85, T.87, T.88, H.122, F.126, L.129, L.138, V.140, V.147, L.152, I.162, I.163, K.166, H.248, M.252, L.264, L.268, Y.272 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.81, A:R.83, A:Q.85, A:T.88, A:F.126, A:L.129, A:L.138, A:V.140, A:I.162, A:I.163 Hydrogen bonds: A:Y.272 Salt bridges: A:H.122, A:H.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Honda, A. et al., Functional and Structural Insights into Human PPAR alpha / delta / gamma Subtype Selectivity of Bezafibrate, Fenofibric Acid, and Pemafibrate. Int J Mol Sci (2022)

Release Date

2022-05-25

Peptides

Peroxisome proliferator-activated receptor delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peroxisome proliferator-activated receptor delta

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