SMTL ID : 7wi0.1

SARS-CoV-2 Omicron variant spike in complex with three human neutralizing antibodies

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.11, L.36 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S. et al., Three SARS-CoV-2 antibodies provide broad and synergistic neutralization against variants of concern, including Omicron. Cell Rep (2022)

Release Date

2022-06-22

Peptides

Spike protein S1: A
XMA04 heavy chain variable domain: B
XMA01 heavy chain variable domain: C
IGL c4029_light_IGKV1-39_IGKJ2: D
IG c934_light_IGKV1-5_IGKJ1: E
XMA09 heavy chain variable domain: F
IG c1437_light_IGLV1-40_IGLJ1: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
H

G
L

Spike protein S1

XMA04 heavy chain variable domain

XMA01 heavy chain variable domain

IGL c4029_light_IGKV1-39_IGKJ2

IG c934_light_IGKV1-5_IGKJ1

XMA09 heavy chain variable domain

IG c1437_light_IGLV1-40_IGLJ1

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