SMTL ID : 7wbl.1

Cryo-EM structure of human ACE2 complexed with SARS-CoV-2 Omicron RBD

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: Q.63, N.85 No protein-ligand interaction detected (PLIP) NAG.2: 3 residues within 4Å: Chain A: N.35, T.37, Q.322 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.35, A:Q.322 NAG.3: 2 residues within 4Å: Chain A: K.8, N.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.8 NAG.4: 2 residues within 4Å: Chain A: N.304, Q.307 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 3 residues within 4Å: Chain A: H.356, H.360, E.384 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.356, A:H.360, A:E.384, A:E.384

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, P. et al., Receptor binding and complex structures of human ACE2 to spike RBD from omicron and delta SARS-CoV-2. Cell (2022)

Release Date

2022-01-19

Peptides

Angiotensin-converting enzyme 2: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Angiotensin-converting enzyme 2

Spike protein S1

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