SMTL ID : 7wsa.1

Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: F.9, D.10, F.13, N.14 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.13 Hydrogen bonds: A:D.10 NAG.2: 3 residues within 4Å: Chain B: N.35, T.37, Q.322 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.35, B:T.37, B:Q.322 NAG.3: 3 residues within 4Å: Chain B: K.8, N.72, T.74 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.8, B:N.72, B:T.74 NAG.4: 3 residues within 4Å: Chain B: Q.83, N.85, V.89 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.83, B:N.85 NAG.5: 2 residues within 4Å: Chain B: N.304, M.305 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.304, B:M.305 NAG.6: 2 residues within 4Å: Chain B: N.414, W.576 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Chain B: S.402, N.528 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, H. et al., Structures of Omicron spike complexes and implications for neutralizing antibody development. Cell Rep (2022)

Release Date

2022-06-01

Peptides

Spike protein S1: A
Processed angiotensin-converting enzyme 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Spike protein S1

Processed angiotensin-converting enzyme 2

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