- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.9: 2 residues within 4Å:- Chain A: N.31, F.34
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.31, A:R.80
EDO.10: 2 residues within 4Å:- Chain A: W.161, Y.162
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.162
EDO.11: 4 residues within 4Å:- Chain A: T.13, S.14, S.15, N.16
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.15, A:N.16, A:N.16
EDO.12: 4 residues within 4Å:- Chain A: S.295, D.296, T.297, E.321
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.295, A:D.296, A:T.297
- Water bridges: A:D.296, A:T.297
EDO.13: 4 residues within 4Å:- Chain A: D.296, T.297, T.341, Q.342
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.296, A:T.341, A:Q.342
EDO.14: 2 residues within 4Å:- Chain A: D.70
- Ligands: EDO.16
2 PLIP interactions:2 interactions with chain A- Water bridges: A:D.70, A:D.70
EDO.15: 3 residues within 4Å:- Chain A: A.155, Q.156, E.159
2 PLIP interactions:2 interactions with chain A- Water bridges: A:A.155, A:E.159
EDO.16: 4 residues within 4Å:- Chain A: G.68, S.69, D.70
- Ligands: EDO.14
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.70, A:D.70
EDO.17: 8 residues within 4Å:- Chain A: W.153, N.154, A.155, A.158, D.203, T.205, K.206, T.211
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.203, A:T.211, A:T.211
- Water bridges: A:T.211
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ikeuchi, T. et al., Crystal structure of Grimontia hollisae collagenase provides insights into its novel substrate specificity toward collagen. J.Biol.Chem. (2022)
- Release Date
- 2022-06-29
- Peptides
- Microbial collagenase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ikeuchi, T. et al., Crystal structure of Grimontia hollisae collagenase provides insights into its novel substrate specificity toward collagen. J.Biol.Chem. (2022)
- Release Date
- 2022-06-29
- Peptides
- Microbial collagenase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A