- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.8: 6 residues within 4Å:- Chain A: D.134, G.137, Q.139, W.179, N.180
- Ligands: 1PE.7
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.134, A:Q.139, A:W.179
PEG.9: 4 residues within 4Å:- Chain A: H.491, D.493, E.494, Y.521
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.493, A:E.494
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.10: 1 residues within 4Å:- Chain A: D.70
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.70
EDO.11: 5 residues within 4Å:- Chain A: G.252, D.255, D.353, K.356, Y.357
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.252, A:Q.303, A:K.356
- Water bridges: A:D.255
EDO.12: 3 residues within 4Å:- Chain A: G.369, N.402, Y.477
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.369
- Water bridges: A:G.370, A:E.406
EDO.13: 6 residues within 4Å:- Chain A: Y.372, L.373, E.374, G.375, F.421
- Ligands: EDO.21
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.372, A:E.374, A:G.375
- Water bridges: A:E.374
EDO.14: 5 residues within 4Å:- Chain A: H.325, N.332, R.414, F.415
- Ligands: EDO.24
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.332, A:R.414
- Water bridges: A:E.321, A:H.325
EDO.15: 2 residues within 4Å:- Chain A: N.379, V.380
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:V.380
EDO.16: 4 residues within 4Å:- Chain A: T.291, K.299, R.301, Q.344
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.301, A:Q.344
EDO.17: 1 residues within 4Å:- Chain A: S.185
No protein-ligand interaction detected (PLIP)EDO.18: 4 residues within 4Å:- Chain A: G.68, S.69, D.70, E.71
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.69, A:D.70, A:E.71
- Water bridges: A:G.68
EDO.19: 6 residues within 4Å:- Chain A: W.153, A.158, T.205, K.206, S.209, T.211
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:W.153, A:S.209, A:S.209
EDO.20: 3 residues within 4Å:- Chain A: V.207, N.208, S.209
No protein-ligand interaction detected (PLIP)EDO.21: 3 residues within 4Å:- Chain A: M.371, F.421
- Ligands: EDO.13
2 PLIP interactions:2 interactions with chain A- Water bridges: A:Y.468, A:Y.468
EDO.22: 2 residues within 4Å:- Chain A: F.34, R.80
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.80
EDO.23: 1 residues within 4Å:- Chain A: T.151
1 PLIP interactions:1 interactions with chain A- Water bridges: A:T.151
EDO.24: 3 residues within 4Å:- Chain A: T.297, T.341
- Ligands: EDO.14
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.341
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ikeuchi, T. et al., Crystal structure of Grimontia hollisae collagenase provides insights into its novel substrate specificity toward collagen. J.Biol.Chem. (2022)
- Release Date
- 2022-06-29
- Peptides
- Microbial collagenase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ikeuchi, T. et al., Crystal structure of Grimontia hollisae collagenase provides insights into its novel substrate specificity toward collagen. J.Biol.Chem. (2022)
- Release Date
- 2022-06-29
- Peptides
- Microbial collagenase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B