SMTL ID : 7wva.1

Crystal structure of mouse Cryptochrome 1 in complex with TH401 compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x 6I3: 2-(1-methylbenzimidazol-2-yl)sulfanyl-N-[(E)-(2,3,4-trimethoxyphenyl)methylideneamino]ethanamide(Non-covalent)

6I3.1: 16 residues within 4Å: Chain A: Q.291, W.294, F.298, H.357, R.360, H.361, A.364, F.383, L.387, A.390, I.394, N.395, S.398, W.399, W.401, L.402 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.298, A:F.298, A:I.394, A:L.402 Hydrogen bonds: A:R.360 Water bridges: A:R.360 pi-Stacking: A:W.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yagi, M. et al., A methylbenzimidazole derivative regulates mammalian circadian rhythms by targeting Cryptochrome proteins. F1000Res (2022)

Release Date

2022-09-07

Peptides

Cryptochrome-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cryptochrome-1

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