SMTL ID : 7wz3.1

Cryo-EM structure of human TRiC-tubulin-S1 state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-mer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)

ADP.1: 13 residues within 4Å: Chain I: L.41, G.42, P.43, D.93, G.94, T.95, T.96, G.411, L.451, V.480, G.482, I.495, E.497 10 PLIP interactions: 10 interactions with chain I Hydrogen bonds: I:G.42, I:D.93, I:G.94, I:T.96, I:T.96, I:T.96, I:T.96, I:G.411, I:G.482, I:E.497 ADP.2: 6 residues within 4Å: Chain J: T.96, G.411, V.480, G.482, E.483, E.497 7 PLIP interactions: 7 interactions with chain J Hydrogen bonds: J:T.96, J:T.96, J:T.96, J:G.411, J:G.482, J:E.483, J:E.497 ADP.3: 17 residues within 4Å: Chain M: Y.47, G.48, P.49, D.99, G.100, T.101, N.102, T.166, S.167, M.169, S.170, K.171, D.394, G.412, L.452, D.499, K.504 12 PLIP interactions: 12 interactions with chain M Hydrogen bonds: M:G.48, M:D.68, M:G.100, M:T.101, M:T.101, M:N.102, M:N.102, M:S.170, M:D.499, M:K.504 Salt bridges: M:K.171, M:K.171 ADP.4: 15 residues within 4Å: Chain N: Y.47, P.49, D.99, G.100, T.101, N.102, T.166, M.169, S.170, K.171, G.411, G.412, I.482, I.497, D.499 11 PLIP interactions: 11 interactions with chain N Hydrogen bonds: N:G.100, N:T.101, N:T.101, N:N.102, N:N.102, N:N.102, N:S.170, N:G.412, N:D.499 Salt bridges: N:K.171, N:K.171 ADP.5: 17 residues within 4Å: Chain O: L.38, P.40, D.90, G.91, T.92, T.93, T.154, R.157, T.158, K.159, G.410, A.411, G.412, L.451, V.479, L.481, D.496 14 PLIP interactions: 14 interactions with chain O Hydrogen bonds: O:G.39, O:D.90, O:G.91, O:T.93, O:T.93, O:T.93, O:T.93, O:R.157, O:R.157, O:T.158, O:T.158, O:A.411, O:G.412, O:D.496 ADP.6: 16 residues within 4Å: Chain P: L.38, G.39, P.40, D.59, D.90, G.91, T.92, T.93, S.94, R.157, T.158, G.410, A.411, L.481, V.494, D.496 15 PLIP interactions: 15 interactions with chain P Hydrogen bonds: P:G.91, P:T.92, P:T.93, P:T.93, P:T.93, P:T.93, P:S.94, P:R.157, P:R.157, P:R.157, P:T.158, P:A.411, P:D.496 pi-Cation interactions: P:R.157, P:R.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, C. et al., Pathway and mechanism of tubulin folding mediated by TRiC/CCT along its ATPase cycle revealed using cryo-EM. Commun Biol (2023)

Release Date

2023-02-22

Peptides

T-complex protein 1 subunit alpha: AB
T-complex protein 1 subunit beta: CD
T-complex protein 1 subunit delta: EF
T-complex protein 1 subunit epsilon: GH
T-complex protein 1 subunit gamma: IJ
T-complex protein 1 subunit eta: KL
T-complex protein 1 subunit theta: MN
T-complex protein 1 subunit zeta: OP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
a

B
A

C
b

D
B

E
D

F
d

G
E

H
e

I
g

J
G

K
h

L
H

M
Q

N
q

O
Z

P
z

T-complex protein 1 subunit alpha

T-complex protein 1 subunit beta

T-complex protein 1 subunit delta

T-complex protein 1 subunit epsilon

T-complex protein 1 subunit gamma

T-complex protein 1 subunit eta

T-complex protein 1 subunit theta

T-complex protein 1 subunit zeta

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