SMTL ID : 7x0t.1

Cryo-EM structure of human ABCD1 E630Q in the presence of C26:0-CoA and ATP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

1 x CO8: OCTANOYL-COENZYME A(Non-covalent)

CO8.1: 18 residues within 4Å: Chain A: V.240, S.244, L.248, L.267, F.270, M.353, K.354, W.357, S.358, G.361, L.362, M.364, R.407, L.410, A.413, A.414, I.417, E.418 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.358, A:L.362, A:E.418

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 14 residues within 4Å: Chain B: N.203, R.454, T.501, P.502, S.503, E.505, P.526, N.527, C.529, G.530, K.531, S.532, S.533, R.536 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:N.203, B:R.454, B:T.501, B:P.526, B:C.529, B:G.530, B:K.531, B:S.532, B:S.532, B:S.533, B:S.533, B:R.536 Salt bridges: B:K.531, B:K.531, B:R.536 pi-Stacking: B:W.542

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiong, C. et al., Structural insights into substrate recognition and translocation of human peroxisomal ABC transporter ALDP. Signal Transduct Target Ther (2023)

Release Date

2023-03-22

Peptides

ATP-binding cassette sub-family D member 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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ATP-binding cassette sub-family D member 1

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