SMTL ID : 7x2h.1 (1 other biounit)

Crystal structure of SARS-CoV-2 spike receptor-binding domain bound with 6-2C Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: H.104, W.105 Chain C: G.6, F.9, N.10 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:F.9 Hydrogen bonds: C:N.10 Water bridges: C:N.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Inactivated vaccine-elicited potent antibodies can broadly neutralize SARS-CoV-2 circulating variants. Nat Commun (2023)

Release Date

2023-03-01

Peptides

6-2C H chain: A
6-2C L chain: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

6-2C H chain

6-2C L chain

Spike protein S1

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