SMTL ID : 7x7u.1

Cryo-EM structure of SARS-CoV-2 Delta variant spike protein in complex with three nAbs X01, X10 and X17

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: F.15, F.19, N.20, V.44 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.15, A:F.19, A:V.44 Hydrogen bonds: A:N.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiong, H. et al., The neutralizing breadth of antibodies targeting diverse conserved epitopes between SARS-CoV and SARS-CoV-2. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-08-17

Peptides

Spike protein S1: A
X10 light chain: B
X10 heavy chain: C
X17 light chain: D
X17 heavy chain: E
X01 light chain: F
X01 heavy chain: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
L

C
H

D
B

E
A

F
D

G
C

Spike protein S1

X10 light chain

X10 heavy chain

X17 light chain

X17 heavy chain

X01 light chain

X01 heavy chain

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