SMTL ID : 7x9d.1

DNMT3B in complex with harmine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.08 Å

Oligo State

hetero-2-2-mer

Ligands

2 x HRM: 7-METHOXY-1-METHYL-9H-BETA-CARBOLINE(Non-covalent)

HRM.1: 10 residues within 4Å: Chain A: F.14, S.37, E.38, V.39, N.59, D.60, V.61, P.83, L.104, R.265 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.39, A:V.39, A:V.61, A:P.83, A:L.104 Hydrogen bonds: A:V.39, A:V.61 pi-Stacking: A:F.14 HRM.2: 11 residues within 4Å: Chain D: F.14, S.37, E.38, V.39, N.59, D.60, V.61, R.62, P.83, L.104, R.265 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:V.39, D:V.39, D:V.61, D:P.83, D:L.104 Hydrogen bonds: D:V.61 pi-Stacking: D:F.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, C.C. et al., Mechanistic Insights into Harmine-Mediated Inhibition of Human DNA Methyltransferases and Prostate Cancer Cell Growth. Acs Chem.Biol. (2023)

Release Date

2023-03-15

Peptides

DNA (cytosine-5)-methyltransferase 3B: AD
DNA (cytosine-5)-methyltransferase 3-like: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

C
C

DNA (cytosine-5)-methyltransferase 3B

DNA (cytosine-5)-methyltransferase 3-like

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