SMTL ID : 7xc1.1 (1 other biounit)

Crystal structure of ERK2 with an allosteric inhibitor 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x 5ID: (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL(Non-covalent)

5ID.1: 15 residues within 4Å: Chain A: I.39, G.40, E.41, G.42, V.47, A.60, I.92, Q.113, D.114, L.115, M.116, T.118, D.119, K.122, L.164 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.164 Hydrogen bonds: A:D.114, A:M.116, A:D.119, A:K.122, A:K.122 Halogen bonds: A:Q.113

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 12 residues within 4Å: Chain A: Q.70, T.71, Q.74, R.75, R.156, L.178, R.180, T.193, E.194, Y.195, D.344, D.345 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.156, A:Y.195 Water bridges: A:Q.74, A:R.78 Salt bridges: A:R.75, A:R.180

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 10 residues within 4Å: Chain A: G.190, F.191, L.192, T.193, E.194, Y.195, V.196, R.202, I.206, S.210 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.193, A:E.194, A:E.194, A:V.196, A:V.196 Water bridges: A:M.207 GOL.4: 5 residues within 4Å: Chain A: K.308, R.309, I.310, E.311, Q.314 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.311

1 x B8Z: ~{N}-(5,6-dimethoxy-1,3-benzothiazol-2-yl)-2-[(4-fluoranylphenoxy)methyl]-1,3-thiazole-4-carboxamide(Non-covalent)

B8Z.5: 12 residues within 4Å: Chain A: L.123, Q.127, H.128, L.129, S.130, N.131, H.133, T.168, L.230, N.289, A.290, D.291 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Q.127, A:L.230, A:N.289, A:A.290 Hydrogen bonds: A:H.128, A:S.130

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain A: N.35, Y.51, R.58 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.35 Salt bridges: A:R.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, M. et al., Structural basis for ERK2 allosteric inhibitors. To Be Published

Release Date

2023-03-22

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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