SMTL ID : 7xc1.2 (1 other biounit)

Crystal structure of ERK2 with an allosteric inhibitor 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 10 residues within 4Å: Chain A: Q.70, T.71, Q.74, R.75, R.180, T.193, E.194, Y.195, D.344, D.345 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.74, A:Y.195 Salt bridges: A:R.75, A:R.180, A:D.345

1 x 5ID: (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL(Non-covalent)

5ID.2: 14 residues within 4Å: Chain A: I.39, G.40, E.41, V.47, A.60, I.92, Q.113, D.114, L.115, M.116, D.119, K.122, S.161, L.164 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.41, A:D.114, A:M.116, A:D.119, A:D.119, A:D.119, A:K.122 Halogen bonds: A:Q.113

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: N.131, D.132, C.135, D.291, K.293, Y.320, Q.323 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.131, A:D.132, A:Q.323 GOL.4: 4 residues within 4Å: Chain A: H.69, Q.70, T.71, Y.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.70

Links

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Citation

Yoshida, M. et al., Structural basis for ERK2 allosteric inhibitors. To Be Published

Release Date

2023-03-22

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Mitogen-activated protein kinase 1

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