- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 9PV: (2~{S})-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-propanoic acid(Non-covalent)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 14 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.3: 4 residues within 4Å:- Chain A: H.56, E.255, K.268, W.272
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.255, A:E.255, A:K.268
PEG.4: 4 residues within 4Å:- Chain A: K.46, Q.50, Y.51, R.65
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.46, A:Q.50
PEG.5: 4 residues within 4Å:- Chain A: N.49, Q.50
- Chain B: P.14, Q.18
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.18
PEG.6: 4 residues within 4Å:- Chain A: A.39, E.42, T.43, K.46
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.43
PEG.7: 7 residues within 4Å:- Chain A: N.338, L.339, V.342, P.344, V.374, T.375, A.376
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:L.339, A:T.375, A:T.375
PEG.8: 5 residues within 4Å:- Chain A: V.350, E.354, K.400, T.401, Y.404
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.354
- Water bridges: A:E.354
PEG.9: 4 residues within 4Å:- Chain A: D.8, I.9, F.293, E.296
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.8
- Water bridges: A:D.8
PEG.13: 4 residues within 4Å:- Chain B: H.56, E.255, K.268, W.272
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.255, B:K.268
PEG.14: 4 residues within 4Å:- Chain B: K.46, Q.50, Y.51, R.65
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.46, B:Q.50
PEG.15: 4 residues within 4Å:- Chain A: P.14, Q.18
- Chain B: N.49, Q.50
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.18
PEG.16: 4 residues within 4Å:- Chain B: A.39, E.42, T.43, K.46
No protein-ligand interaction detected (PLIP)PEG.17: 7 residues within 4Å:- Chain B: N.338, L.339, V.342, P.344, V.374, T.375, A.376
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:L.339, B:T.375, B:T.375
PEG.18: 5 residues within 4Å:- Chain B: V.350, E.354, K.400, T.401, Y.404
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.354
- Water bridges: B:E.354
PEG.19: 4 residues within 4Å:- Chain B: D.8, I.9, F.293, E.296
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.8
- Water bridges: B:E.296
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.10: 5 residues within 4Å:- Chain A: T.7, R.10, T.387, E.389, E.390
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.387, A:T.387
- Water bridges: A:R.10, A:E.388
PGE.20: 5 residues within 4Å:- Chain B: T.7, R.10, T.387, E.389, E.390
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.387, B:E.389
- Water bridges: B:R.10, B:E.388
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, R. et al., X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine. to be published
- Release Date
- 2023-04-05
- Peptides
- Cysteine desulfurase SufS: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 9PV: (2~{S})-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-propanoic acid(Non-covalent)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 14 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, R. et al., X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine. to be published
- Release Date
- 2023-04-05
- Peptides
- Cysteine desulfurase SufS: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A