SMTL ID : 7xem.1

Cholesterol bound state of mTRPV2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.1: 10 residues within 4Å: Chain A: Y.466, F.467, L.470, L.505, L.508, I.524, I.528 Chain B: L.620, A.623, L.627 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Y.466, A:F.467, A:L.470, A:L.508, A:I.524, A:I.528, B:L.620, B:A.623, B:L.627 CLR.2: 9 residues within 4Å: Chain B: Y.466, F.467, L.470, L.505, L.508, I.524, I.528 Chain C: A.623, L.627 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:Y.466, B:F.467, B:L.470, B:L.508, B:I.524, B:I.528, C:A.623, C:L.627 CLR.3: 11 residues within 4Å: Chain C: Y.466, F.467, L.470, V.501, L.505, L.508, I.524, I.528 Chain D: L.620, A.623, L.627 10 PLIP interactions: 3 interactions with chain D, 7 interactions with chain C Hydrophobic interactions: D:L.620, D:A.623, D:L.627, C:Y.466, C:F.467, C:L.470, C:V.501, C:L.508, C:I.524, C:I.528 CLR.4: 9 residues within 4Å: Chain A: A.623, L.627 Chain D: Y.466, F.467, L.470, L.505, L.508, I.524, I.528 8 PLIP interactions: 6 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:Y.466, D:F.467, D:L.470, D:L.508, D:I.524, D:I.528, A:A.623, A:L.627

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, N. et al., Structural mechanisms of TRPV2 modulation by endogenous and exogenous ligands. Nat.Chem.Biol. (2023)

Release Date

2022-08-17

Peptides

Transient receptor potential cation channel subfamily V member 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 2

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