SMTL ID : 7yep.1

2-APB bound state of mTRPV2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x FZ4: 2-aminoethyl diphenylborinate(Non-covalent)

FZ4.1: 12 residues within 4Å: Chain A: Y.466, F.467, L.470, L.502, L.505, L.508, S.521, I.524, Q.525, I.528 Chain D: F.542, L.627 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.466, A:F.467, A:L.505, A:Q.525, A:I.528 FZ4.2: 12 residues within 4Å: Chain A: F.542, L.627 Chain B: Y.466, F.467, L.470, L.502, L.505, L.508, S.521, I.524, Q.525, I.528 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.466, B:F.467, B:L.505, B:I.528 FZ4.3: 12 residues within 4Å: Chain B: F.542, L.627 Chain C: Y.466, F.467, L.470, L.502, L.505, L.508, S.521, I.524, Q.525, I.528 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:Y.466, C:F.467, C:L.470, C:L.505, C:I.528 FZ4.4: 13 residues within 4Å: Chain C: F.542, L.627 Chain D: M.463, Y.466, F.467, L.470, L.502, L.505, L.508, S.521, I.524, Q.525, I.528 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:Y.466, D:F.467, D:L.505, D:Q.525, D:I.528

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, N. et al., Structural mechanisms of TRPV2 modulation by endogenous and exogenous ligands. Nat.Chem.Biol. (2023)

Release Date

2022-08-17

Peptides

Transient receptor potential cation channel subfamily V member 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 2

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