SMTL ID : 7xen.1

SufS with L-penicillamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

homo-dimer

Ligands

2 x 9ZN: (2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid(Non-covalent)

9ZN.1: 17 residues within 4Å: Chain A: A.31, A.32, G.94, T.95, T.96, H.124, N.176, D.201, A.203, Q.204, S.224, H.226, K.227, H.363, C.364, R.379 Chain B: T.278 21 PLIP interactions: 19 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:A.203, A:Q.204 Hydrogen bonds: A:T.95, A:T.95, A:T.96, A:N.176, A:Q.204, A:S.224, A:K.227, B:T.278 Water bridges: A:G.94, A:T.96, A:T.97, A:H.226, A:H.226, A:R.379, B:T.278 Salt bridges: A:H.226, A:K.227, A:R.379 pi-Stacking: A:H.124 9ZN.2: 17 residues within 4Å: Chain A: T.278 Chain B: A.31, A.32, G.94, T.95, T.96, H.124, N.176, D.201, A.203, Q.204, S.224, H.226, K.227, H.363, C.364, R.379 22 PLIP interactions: 19 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:A.203, B:Q.204 Hydrogen bonds: B:T.95, B:T.96, B:T.96, B:N.176, B:Q.204, B:S.224, B:K.227, A:T.278 Water bridges: B:G.94, B:T.97, B:H.226, B:H.226, B:H.363, B:R.379, A:T.278, A:T.278 Salt bridges: B:H.226, B:K.227, B:R.379 pi-Stacking: B:H.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, R. et al., X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine. to be published

Release Date

2023-04-05

Peptides

Cysteine desulfurase SufS: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cysteine desulfurase SufS

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