SMTL ID : 7xit.1

Crystal structure of engineered HIV-1 Reverse Transcriptase RNase H domain complexed with nitrofuran methoxy(methoxycarbonyl)phenyl ester

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.23, G.24, E.58, D.78 Ligands: MN.2, E6I.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.23, A:E.58, A:D.78, A:D.78 MN.2: 5 residues within 4Å: Chain A: D.23, D.78, D.139 Ligands: MN.1, E6I.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.23, A:D.78, A:D.139

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: H.129, G.133, E.136 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.129, A:E.136, A:E.136 ZN.4: 2 residues within 4Å: Chain A: E.72, E.119 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.72, A:E.119, A:E.119, H2O.1

1 x E6I: ethyl 4-bromanyl-5-nitro-furan-2-carboxylate(Non-covalent)

E6I.5: 10 residues within 4Å: Chain A: D.23, G.24, A.25, E.58, D.78, S.79, D.139, S.143 Ligands: MN.1, MN.2 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, H. et al., Computational and Crystallographic Analysis of Binding Structures of Inhibitory Compounds for HIV-1 RNase H Activity. J.Chem.Inf.Model. (2022)

Release Date

2022-04-27

Peptides

Reverse Transcriptase RNase H domain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Reverse Transcriptase RNase H domain

Related Entries With Identical Sequence