SMTL ID : 7xne.1

Crystal structure of CBP bromodomain liganded with Y08284

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

homo-dimer

Ligands

2 x GHF: N-[3-(1-cyclopropylpyrazol-4-yl)-2-fluoranyl-5-[(1S)-1-oxidanylethyl]phenyl]-3-ethanoyl-7-methoxy-indolizine-1-carboxamide(Non-covalent)

GHF.1: 15 residues within 4Å: Chain A: L.45, P.46, Q.49, V.51, L.56, I.58, N.104, R.109, V.110 Chain B: L.45, Q.49, L.55, L.56, V.110 Ligands: GHF.2 13 PLIP interactions: 4 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:L.55, B:L.56, B:V.110, A:L.45, A:P.46, A:V.51, A:L.56, A:I.58 Hydrogen bonds: B:Q.49, A:P.46, A:Q.49, A:N.104, A:R.109 GHF.2: 14 residues within 4Å: Chain A: L.45, Q.49, L.55, L.56, V.110 Chain B: L.45, P.46, Q.49, V.51, L.56, I.58, N.104, V.110 Ligands: GHF.1 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:L.45, B:P.46, B:V.51, B:I.58, A:L.55, A:L.56, A:V.110 Hydrogen bonds: B:P.46, B:Q.49, B:N.104, B:R.109, A:Q.49

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain B: N.98, W.101, Y.111 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiang, Q. et al., Design, Synthesis, and Biological Evaluation of 1-(Indolizin-3-yl)ethan-1-ones as CBP Bromodomain Inhibitors for the Treatment of Prostate Cancer. J.Med.Chem. (2022)

Release Date

2022-07-06

Peptides

CREB-binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CREB-binding protein

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