SMTL ID : 7xwq.1

Human Estrogen Receptor beta Ligand-binding Domain in Complex with (R)-2-(2-chloro-4-hydroxyphenyl)-3-(4-hydroxyphenyl)propanenitrile

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

hetero-2-2-mer

Ligands

2 x I1M: (2~{R})-2-(2-chloranyl-4-oxidanyl-phenyl)-3-(4-hydroxyphenyl)propanenitrile(Non-covalent)

I1M.1: 15 residues within 4Å: Chain A: M.40, L.43, L.46, A.47, E.50, M.81, L.84, M.85, R.91, F.101, I.121, L.125, G.217, H.220, L.221 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.46, A:L.84, A:F.101, A:L.221 Hydrogen bonds: A:L.84, A:R.91, A:H.220 Water bridges: A:R.91 pi-Stacking: A:F.101 Halogen bonds: A:L.43 I1M.2: 16 residues within 4Å: Chain B: M.40, L.43, L.46, A.47, E.50, M.81, L.84, L.88, R.91, F.101, I.121, L.125, G.217, H.220, L.221, M.224 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.43, B:L.46, B:L.84, B:L.88, B:L.88, B:F.101, B:L.221, B:L.221 Hydrogen bonds: B:L.84, B:R.91, B:H.220 Water bridges: B:R.91 pi-Stacking: B:F.101 Halogen bonds: B:L.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Handa, C. et al., Evaluating the correlation of binding affinities between isothermal titration calorimetry and fragment molecular orbital method of estrogen receptor beta with diarylpropionitrile (DPN) or DPN derivatives. J.Steroid Biochem.Mol.Biol. (2022)

Release Date

2022-07-20

Peptides

Estrogen receptor beta: AB
SRC peptide: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Estrogen receptor beta

SRC peptide

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