SMTL ID : 7xx6.1 (1 other biounit)

Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169a DNA fragment)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.39 Å

Oligo State

hetero-4-4-4-4-1-mer

Ligands

21 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 2 residues within 4Å: Chain C: E.67 Chain D: V.51 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:V.51 CA.2: 1 residues within 4Å: Chain G: E.44 No protein-ligand interaction detected (PLIP) CA.3: 2 residues within 4Å: Chain I: G.80, G.81 No protein-ligand interaction detected (PLIP) CA.4: 3 residues within 4Å: Chain I: G.134 Chain J: G.31, C.32 No protein-ligand interaction detected (PLIP) CA.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.6: 2 residues within 4Å: Chain I: G.146, G.147 No protein-ligand interaction detected (PLIP) CA.7: 1 residues within 4Å: Chain I: G.49 No protein-ligand interaction detected (PLIP) CA.8: 3 residues within 4Å: Chain I: G.31 Chain J: G.134, C.135 No protein-ligand interaction detected (PLIP) CA.9: 2 residues within 4Å: Chain I: G.140, C.141 No protein-ligand interaction detected (PLIP) CA.10: 1 residues within 4Å: Chain I: G.133 No protein-ligand interaction detected (PLIP) CA.12: 1 residues within 4Å: Chain J: G.112 No protein-ligand interaction detected (PLIP) CA.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.14: 1 residues within 4Å: Chain J: G.49 No protein-ligand interaction detected (PLIP) CA.15: 1 residues within 4Å: Chain J: C.138 No protein-ligand interaction detected (PLIP) CA.16: 4 residues within 4Å: Chain O: E.76, Q.79, D.80 Ligands: CA.17 1 PLIP interactions: 1 interactions with chain O Metal complexes: O:D.80 CA.17: 4 residues within 4Å: Chain O: E.76, D.80 Chain P: D.27 Ligands: CA.16 No protein-ligand interaction detected (PLIP) CA.18: 2 residues within 4Å: Chain S: G.31 Chain T: G.134 No protein-ligand interaction detected (PLIP) CA.19: 1 residues within 4Å: Chain T: G.64 No protein-ligand interaction detected (PLIP) CA.20: 2 residues within 4Å: Chain S: G.43 Chain T: A.122 No protein-ligand interaction detected (PLIP) CA.21: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.25: 1 residues within 4Å: Chain U: E.63 No protein-ligand interaction detected (PLIP)

4 x K: POTASSIUM ION(Non-functional Binders)

K.11: 3 residues within 4Å: Chain I: T.57, A.58 Chain J: A.111 No protein-ligand interaction detected (PLIP) K.22: 2 residues within 4Å: Chain T: T.57, A.58 No protein-ligand interaction detected (PLIP) K.23: 2 residues within 4Å: Chain T: T.118, A.119 No protein-ligand interaction detected (PLIP) K.24: 1 residues within 4Å: Chain T: G.139 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adhireksan, Z. et al., Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169a DNA fragment). To Be Published

Release Date

2023-05-31

Peptides

Histone H3.1: AEKO
Histone H4: BFLP
Histone H2A type 1-B/E: CGMQ
Histone H2B type 1-J: DHNR
Histone H1.0: U

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

K
K

O
O

B
B

F
F

L
L

P
P

C
C

G
G

M
M

Q
Q

D
D

H
H

N
N

R
R

U
o

Histone H3.1

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-J

Histone H1.0

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