SMTL ID : 7xx6.2 (1 other biounit)

Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169a DNA fragment)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.39 Å

Oligo State

hetero-4-4-4-4-1-mer

Ligands

26 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.2: 1 residues within 4Å: Chain J: A.69 No protein-ligand interaction detected (PLIP) CA.3: 1 residues within 4Å: Chain G: E.44 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:E.44 CA.4: 1 residues within 4Å: Chain G: E.94 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:E.94, G:E.94 CA.5: 3 residues within 4Å: Chain I: G.134 Chain J: G.31, C.32 No protein-ligand interaction detected (PLIP) CA.6: 3 residues within 4Å: Chain I: G.31, C.32 Chain J: G.134 No protein-ligand interaction detected (PLIP) CA.7: 1 residues within 4Å: Chain I: G.139 No protein-ligand interaction detected (PLIP) CA.8: 2 residues within 4Å: Chain I: G.146, G.147 No protein-ligand interaction detected (PLIP) CA.9: 2 residues within 4Å: Chain I: G.140, C.141 No protein-ligand interaction detected (PLIP) CA.10: 1 residues within 4Å: Chain I: G.112 No protein-ligand interaction detected (PLIP) CA.11: 3 residues within 4Å: Chain I: G.80, G.81 Chain J: T.84 No protein-ligand interaction detected (PLIP) CA.13: 1 residues within 4Å: Chain J: G.49 No protein-ligand interaction detected (PLIP) CA.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.15: 1 residues within 4Å: Chain J: G.112 No protein-ligand interaction detected (PLIP) CA.16: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.17: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.18: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.19: 2 residues within 4Å: Chain I: G.133 Chain J: C.33 No protein-ligand interaction detected (PLIP) CA.20: 2 residues within 4Å: Chain J: G.72, C.73 No protein-ligand interaction detected (PLIP) CA.22: 2 residues within 4Å: Chain O: Q.79, D.80 No protein-ligand interaction detected (PLIP) CA.23: 1 residues within 4Å: Chain P: D.27 1 PLIP interactions: 1 interactions with chain P Metal complexes: P:D.27 CA.24: 1 residues within 4Å: Chain S: G.30 No protein-ligand interaction detected (PLIP) CA.25: 2 residues within 4Å: Chain S: G.145, G.146 No protein-ligand interaction detected (PLIP) CA.26: 3 residues within 4Å: Chain S: G.31 Chain T: G.134, C.135 No protein-ligand interaction detected (PLIP) CA.27: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.28: 1 residues within 4Å: Chain U: E.63 1 PLIP interactions: 1 interactions with chain U Metal complexes: U:E.63

2 x K: POTASSIUM ION(Non-functional Binders)

K.12: 2 residues within 4Å: Chain I: T.57, A.58 No protein-ligand interaction detected (PLIP) K.21: 1 residues within 4Å: Chain J: A.48 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adhireksan, Z. et al., Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169a DNA fragment). To Be Published

Release Date

2023-05-31

Peptides

Histone H3.1: AEKO
Histone H4: BFLP
Histone H2A type 1-B/E: CGMQ
Histone H2B type 1-J: DHNR
Histone H1.0: U

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
U

E
Y

K
e

O
i

B
V

F
Z

L
f

P
j

C
W

G
a

M
g

Q
k

D
X

H
b

N
h

R
l

U
p

Histone H3.1

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-J

Histone H1.0

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