SMTL ID : 7xyd.2 (1 other biounit)

Crystal structure of TMPRSS2 in complex with Nafamostat

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.105, S.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.105

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: N.23, D.26, V.28, H.30, D.36, E.37 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.23, A:D.26, A:V.28, A:H.30, A:D.36

1 x GBS: 4-carbamimidamidobenzoic acid(Covalent)

GBS.3: 13 residues within 4Å: Chain B: D.180, S.181, C.182, Q.183, G.184, S.186, T.204, S.205, W.206, G.207, G.209, C.210, G.217 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:T.204 Hydrogen bonds: B:S.181, B:S.181, B:G.184, B:G.209 Salt bridges: B:D.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Crystal structure of TMPRSS2 in complex with Nafamostat. To Be Published

Release Date

2023-12-06

Peptides

Transmembrane protease serine 2 catalytic chain: A
Transmembrane protease serine 2 catalytic chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Transmembrane protease serine 2 catalytic chain

Transmembrane protease serine 2 catalytic chain

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